Query= MSMg01no150_m23.b1 MSMg01no150_m23.b1 CHROMAT_FILE:
MSMg01no150_m23.b1 PHD_FILE: MSMg01no150_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:28 2005
(669 letters)
>mm_chr1_31898170_31899233
Length = 1064
Score = 1201 bits (621), Expect = 0.0
Identities = 654/667 (98%), Gaps = 7/667 (1%)
Strand = Plus / Minus
Query: 4 ggaattccaggaagtgagcatgctaacacgggcaggtagaaatccaactgtcctgatttc 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ggaattccaggaagtgag-atgctaacacgggcaggtagaaatccaactgtcctgatttc 806
Query: 64 ttcctgtgtgaaggtcacacatagatgatttaaagaagactcattgtcccttggtgagat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttcctgtgtgaaggtcacacatagatgatttaaagaagactcattgtcccttggtgagat 746
Query: 124 ttgcaaagcagaaggagctggaggattatctgactcaggccctttatttcacatacaaag 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 ttgcaaagcagaaggagctggaggattatctgactcaggccccttatttcacatacaaag 686
Query: 184 acattgaatttgaaatacactgtgagatgggcagaaggcactgggattt-aagttaatgc 242
| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 685 aaattgaattggaaatacactgtgagatgggcagaaggcactgggatttgaagttaacgc 626
Query: 243 tacagaaaagaatatcagtcataacacttactaatcaaatatacctcgataaactattaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacagaaaagaatatcagtcataacacttactaatcaaatatacctcgataaactattaa 566
Query: 303 aatcctaacttctttccacacttgtaaagagagggatatctacattgtagatggttttga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatcctaacttctttccacacttgtaaagagagggatatctacattgtagatggttttga 506
Query: 363 aaatataccatatgcattttaaagaataaaatattcttcctacctatctattgaacaata 422
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 505 aaatataccatatgcattttaaagaataaaatattctt----cctatctattgaacaata 450
Query: 423 gctgttatgagagggcagcatggaacaaacccagatcactactacattgcaatgaatcat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gctgttatgagagggcagcatggaacaaacccagatcactactacattgcaatgaatcat 390
Query: 483 tctatattgtaatagtgtctgccatctaagattaaaatatccatttgctctttgctttct 542
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 389 tctatattgtaatagtgtctgccatttaagattaaaatatccatttgctctttgctttct 330
Query: 543 tatttcttctaattttcttcctttcgggtcaatgcttcaactacattttagctagggaag 602
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 329 tatttcttctaattttcttcctttggggtcaatgcttcaactacattttagctagggaag 270
Query: 603 aaactgatatctaattattaaactagcaacaaaaaaaaaaacaacccttcaaatgacgaa 662
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 269 aaactgatatctaattattaaactagcaac-aaaaaaaaaacaacccttcaaatgacgaa 211
Query: 663 ggttgta 669
|||||||
Sbjct: 210 ggttgta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1064
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1054
Effective search space: 694586
Effective search space used: 694586
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_m23.g1 MSMg01no150_m23.g1 CHROMAT_FILE:
MSMg01no150_m23.g1 PHD_FILE: MSMg01no150_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:28 2005
(447 letters)
>mm_chr1_31778536_31779382
Length = 847
Score = 748 bits (387), Expect = 0.0
Identities = 432/451 (95%), Gaps = 9/451 (1%)
Strand = Plus / Plus
Query: 1 tttgtttagctctctacctcatttttaaatagggtttttttgattccctggagtctaact 60
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 202 tttgtttagctctctacctcatttttaaataggg-ttatttgattctctggagtctaact 260
Query: 61 tgttgagttctttgtatatactcaaatgagcattcaccataagcaaatatttcttagtat 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tgttgagttctttgtatatactcaaatgatcattcaccataagcaaatatttcttagtat 320
Query: 121 ttttgtgactcagggatatccatagaaacaggactgggtagagaaaaagtaagtaaaggg 180
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ttgtgtgactcagggatatccatagaaacaggaccgggtagagaaaaagtaagtaaaggg 380
Query: 181 aaggagggagggagaaagaaagaggagagagactacttttttatggagctatgtaggctg 240
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 381 aaggagggagggagaaagaaagaggagagagactagttttttatggagatatgtaggctg 440
Query: 241 aaaaatcgtgtcttttgtcaaagtctacaagctgtgaaaatagtaataaatattcaaaat 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aaaaatcgtgtcttttgtcaaagtctacaagctgcgaaaatagtaataaatattcaaaat 500
Query: 301 atacattataaatattgtatgtagtatatcgcataaagctacccc----acaatatatag 356
||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 501 atacattataaatattgtatgtagtatatcgcataaagcta----tagtataatatatag 556
Query: 357 catgtaacataatgtataatgtatactatatagcatatattttataatgtttagcttata 416
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 557 catgtaacataatgtataatgtatactatatagcatatattttataatgtttaacttata 616
Query: 417 gtatagagctaaagataatatatcatataaa 447
|||||||||||||||||||||||||||||||
Sbjct: 617 gtatagagctaaagataatatatcatataaa 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
