BAC Information

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BAC

Clone NameMSMg01-150N06
Chromosome1 (Build37)
Map Location 128,393,798 - 128,394,377
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneSlc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150N06.T7 (MSMg01no150_n06.b1)MSMg01-150N06.TJ (MSMg01no150_n06.g1)
ACCAG353163AG353164
length704708
length of high quality
(start - end)
---584 (80 - 663)
definitionCHROMAT_FILE: MSMg01no150_n06.b1 PHD_FILE: MSMg01no150_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:29 2005CHROMAT_FILE: MSMg01no150_n06.g1 PHD_FILE: MSMg01no150_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTAAAGTCCCCATCATGGGATATACCTGTATCACAACGAC
ATATCGATGGGCTGTGGTGATGCACAGTACGAAAACCCTGACTAAGTATT
ACAGTACTAGACTACACTTGCCATGTGCCTTCGGTGTTCATATAGACAGG
AAAGAGTGAATTTCAGCAGGATGCTTTCTGTTTTCTAAACCAGGACTGAT
GGCGGTAACAAGGTTCTTGGAGAGATACTACTAAATTAGTACTCATTGAA
GAGAAACTGACATATGAGACAACTGATGCTGAAGCCGTAGTAGAACGTCA
AAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTA
AAACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGGATAAAAGGCCATATT
AATAAGCCAAATGAAAAAATGAATGATTCTCTGCATAGGTATATGAAATG
TTGAAGAATATTTAACATTCAAATAAAAATACAAGAGGAAGGAAGTTAGC
ATATTGTTCTTTAATGTGGTACACACACACTAATACCTCACTGAAACAAG
GAATGTGTAAAGAGACACATTCGACTCAATCATAGATAAGTCCAGTGCTC
TCTTAAACTCTACAACCATGTAATATTTGATTAGAACCAGTCAGTGGGTT
GTACTAGACAAAAGCATAAGAATGGAAGAACTATGGAAACTCTTCTCAGA
GGAGGTAGTAGCATGCCTAGGAAAATGACAGAAATCAATAAAATTAATTC
AATGAAATTCAGAGTCTTGAATTTAAACTCTGGAAGTCGTCAAGGACCCT
TACTAGTGCCAATGGAAATGGTCTTGAGGTTTGCACTTAACAAACATTTG
TGTTATCAACAAAGAACAAGAGATATCTAGGGAAAACTGTAAGTAGAAAT
GCAGAAAAGCTGGAAGACAAACTTCACATCCCTGCTTGTCAAATGGAGCT
GTGTGCTGCTGCCATGCAGAGTGGCCCAACACTTGTGATGTGCCTTCCAA
GTCACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_n06.g1 MSMg01no150_n06.g1 CHROMAT_FILE:
MSMg01no150_n06.g1 PHD_FILE: MSMg01no150_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:29 2005
         (584 letters)



>mm_chr1_128393598_128394581
          Length = 984

 Score = 1013 bits (524), Expect = 0.0
 Identities = 568/586 (96%), Gaps = 8/586 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgggataaaaggccatattaataagccaaatgaaaaaatgaatgattctctgcatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgggataaaaggccatattaataagccaaatgaaaaaatgaatgattctctgcatagg 260

                                                                       
Query: 61  tatatgaaatgttgaagaatatttaacattcaaataaaaatacaagaggaaggaagttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatgaaatgttgaagaatatttaacattcaaataaaaatacaagaggaaggaagttag 320

                                                                       
Query: 121 catattgttctttaatgtggtacacacacactaatacctcactgaaacaaggaa--tgtg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | 
Sbjct: 321 catattgttctttaatgtggtacacacacactaatacctcactgaaacaaggaaactct- 379

                                                                       
Query: 179 taaagagacacattcgactcaatcatagataagtccagtgctctcttaaactctacaacc 238
           |     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 380 t-----gacacattcgactcaatcatagataagtccagtgctctcttaaactccacaacc 434

                                                                       
Query: 239 atgtaatatttgattagaaccagtcagtgggttgtactagacaaaagcataagaatggaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atgtaatatttgattagaaccagtcagtgggttgtactagacaaaagcataagaatggaa 494

                                                                       
Query: 299 gaactatggaaactcttctcagaggaggtagtagcatgcctaggaaaatgacagaaatca 358
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaactatgaaaactcttctcagaggaggtagtagcatgcctaggaaaatgacagaaatca 554

                                                                       
Query: 359 ataaaattaattcaatgaaattcagagtcttgaatttaaactctggaagtcgtcaaggac 418
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 555 ataaaattaatgcaatgaaattcagagtcttgaatttaaactctggaagtcgtcaagcac 614

                                                                       
Query: 419 ccttactagtgccaatggaaatggtcttgaggtttgcacttaacaaacatttgtgttatc 478
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 615 ccttactagtgccaatggaaatggtcttgaggtttgcagttaacaaacatttgcgttatc 674

                                                                       
Query: 479 aacaaagaacaagagatatctagggaaaactgtaagtagaaatgcagaaaagctggaaga 538
           ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 675 aacaaagaacaagagatatctagggaaaactgtaattagaaatgcagaagagctgaaaga 734

                                                         
Query: 539 caaacttcacatccctgcttgtcaaatggagctgtgtgctgctgcc 584
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 caaacttcacatccctgcttgtcaaatggagctgtgtgctgctgcc 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)