BAC Information

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BAC

Clone NameMSMg01-151J22
Chromosome1 (Build37)
Map Location 137,510,000 - 137,688,060
singlet/doubletdoublet
Overlap geneLOC623327, Csrp1, Phlda3
Upstream geneJarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714
Downstream geneTnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151J22.T7 (MSMg01no151_j22.b1)MSMg01-151J22.TJ (MSMg01no151_j22.g1)
ACCAG353731AG353732
length814721
length of high quality
(start - end)
243 (51 - 293)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no151_j22.b1 PHD_FILE: MSMg01no151_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:28 2005CHROMAT_FILE: MSMg01no151_j22.g1 PHD_FILE: MSMg01no151_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,510,000 - 137,510,241)(137,687,816 - 137,688,060)
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTACTTTCTCTGGAGCTCACTCTGGCTCCTGTTCTGTCCTC
ACTTCTTATTGTTTTGAGTCCTGAACAGGCAGAGTAAGGCAAGGCTGGGG
AGATGCTTGACTTTATTTAAGGTGGCTACTAGTACCATCATCCTTCACGA
CACCTTCACAGTGCATCTCAGGAGGAAGGTCAAGGGCAGAAGAAAGCTAG
GGATTGAGCTGGAAGGGGAAGCAAGGGAGCCATTGAGAGAGGAGGTTTAG
TCCCTTCTTGCGCCCCCCCTTTTATTTTTCTTACCTTCCCCCCTTCTTCA
ACCTCCTTCCTCTTTATTATTCCCCCCCTCTTATCCATATTACAACCCAT
TGCCCCTTTTCGTTTTTCTCCTATTTTTTTACCCCACCACCCTTCTAANC
AAAAGATATGATATATTTCTCTTCTTTCAAATTATTTCCTATTCCCACCC
TTATCCCTATATTATTCTCCTCCCTCTTCTCCCTCCTTTATTACACAACC
TTCCGAACCCTTTCTTTCTTTTCCCACCACGTTTTTTTTTTCCTGCCTTT
TTTACATTTTTTATATATGCCTCCGTATTCTCCACTCCTCTCTTCTCCTT
ATTTTTATTCTTTTCTCCCTCTCTCCCTTTCCGACGTGATCCTTAACCCT
ATTTTCCTATCTTTAATCAATAACCCTCTTTTTTTTTTCTTGCTTAGTTT
TCTCTATACTTTATTCCTCCTTATCCTTTTCCACCATCTCTACCACCTCC
CCCTATTTTTTTTT
NCCGATGCAGTGGGTAGCCTGGCGGACGCCTGGCCTCCGTATTTAGGTGA
ACTATAGAAGTTATCCCCGAAATTCCTGTCTGAGGCCTGCCATGGCCAAT
ACCCTCACTCGGGCATTCGAACGCATTCTTCACCTGCTAGTTTCAATCTG
AGTCCTGTGTCTGTCCCTCTGTCCTCGGGGTCACAAGAAGGTACAGCCAC
CACCACCGTGGGCCACTCTTGAAAGTCAATTGAGCCCTAGTGTCTGCCTT
GCCCCACCTTGAGTTCTCTGGTCTGCATAGACCATAGCACCAGTTCTGCT
TTGGTCGTAGCCAGCATCTTCTTCCACAGCCTCCTCATTGCTCTCCTGGC
TGCAGCTAGAGCCTCTCCAGCTCCTGAAAGGATCTGATGATGCTATGGAG
TTGGTTCACACACCTCACCCCCCCCTTGGCTTCCTGCTCCCTCGTAACCC
GCCACAGGCTTTGACACTACTGTCAGGGCGTCCTTCCCTCCAGACTTCCT
CCTAGCCTCACTGCCCAGCCACCCCTGATTATGTTAGGTGCCCCTGCTCC
TATACCTACCACCCCCTTCATGTCCCTCTTTCCCAATCTTCACCCTAACG
CTGACATTGTTCATGTCCTTCTCGATGAGTTACTATAGTGTTCACCCCAT
TCTCCCTTTTTTTTGCTTTCCTTCCCCTTCATTCACATTTATAGTATTTT
TGTTTACATTTTTTTCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_j22.b1 MSMg01no151_j22.b1 CHROMAT_FILE:
MSMg01no151_j22.b1 PHD_FILE: MSMg01no151_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:28 2005
         (243 letters)



>mm_chr1_137509799_137510441
          Length = 643

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattctgtactttctctggagctcactctggctcctgttctgtcctcacttcttattg 61
           |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctgtacttgctctggggctcactctggctcctgttctgtcctcacttcttattg 261

                                                                       
Query: 62  ttttgagtcctgaacaggcagagtaaggcaaggctggggagatgcttgactttatttaag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttttgagtcctgaacaggcagagtaaggcaaggctggggagatgcttgactttatttaag 321

                                                                       
Query: 122 gtggctactagtaccatcatccttcacgacaccttcacagtgcatctcaggaggaaggtc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtggctactagtaccatcatccttcacgacaccttcacagtgcatctcaggaggaaggtc 381

                                                                       
Query: 182 aagggcagaagaaagctagggattgagctggaaggggaagcaagggagccattgagagag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aagggcagaagaaagctagggattgagctggaaggggaagcaagggagccattgagagag 441

             
Query: 242 ga 243
           ||
Sbjct: 442 ga 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no151_j22.g1 MSMg01no151_j22.g1 CHROMAT_FILE:
MSMg01no151_j22.g1 PHD_FILE: MSMg01no151_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:28 2005
         (245 letters)



>mm_chr1_137687616_137688260
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcctgtctgaggcctgccatggccaataccctcactcgggcattcgaacgcattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattcctgtctgaggcctgccatggccaataccctcactcgggcattcgaacgcattctt 386

                                                                       
Query: 61  cacctgctagtttcaatctgagtcctgtgtctgtccctctgtcctcggggtcacaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacctgctagtttcaatctgagtcctgtgtctgtccctctgtcctcggggtcacaagaag 326

                                                                       
Query: 121 gtacagccaccaccaccgtgggccactcttgaaagtcaattgagccctagtgtctgcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtacagccaccaccaccgtgggccactcttgaaagtcaattgagccctagtgtctgcctt 266

                                                                       
Query: 181 gccccaccttgagttctctggtctgcatagaccatagcaccagttctgctttggtcgtag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 gccccaccttgagttctctggtctgcatagaccatagcaccagttctgctttggccgtag 206

                
Query: 241 ccagc 245
           |||||
Sbjct: 205 ccagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)