BAC Information

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BAC

Clone NameMSMg01-151K22
Chromosome1 (Build37)
Map Location 42,737,099 - 42,737,437
singlet/doubletsinglet
Overlap gene2610017I09Rik
Upstream geneLOC383634, LOC666582
Downstream genePou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151K22.T7 (MSMg01no151_k22.b1)MSMg01-151K22.TJ (MSMg01no151_k22.g1)
ACCAG353777AG353778
length746733
length of high quality
(start - end)
341 (76 - 416)30 (78 - 107)
definitionCHROMAT_FILE: MSMg01no151_k22.b1 PHD_FILE: MSMg01no151_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:33 2005CHROMAT_FILE: MSMg01no151_k22.g1 PHD_FILE: MSMg01no151_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCACAGCATCCGCG
GAATTCACTGTTCATTGCATTCAGGCCTTTCCTTTCTATTTGTTACTAAA
AACAAAAACAAAAAGCAAACAAACAAAAAAACCATCCTGAAAACTGTGCA
ATCTAAGTTAGCTCTTCTAAGTAAATTTGGAAGATTGGGACTAAGTGTCA
GCCATCCCGCAATGCTTCTTTCTAGCAACGTTGGCAGAGATGGACATAGG
GCCCTGTACAGAATTGAGATCCTCGTGCCTGTGAACATTTACTCCTATTT
ACATAAAGGGACTTGAGGGGCCCACTTTACCAGGCTTTACCATGGCTGCT
CATTGAACTGTTAGGTATCTGGTCACCTACTTACTTGGACTCAGTAGAGT
CACGCACACATCATACCCAGCCCCCCATAGTAAAGAGCCTAGCTGGGAAT
ATGAAGATTGTTTACATTATTAAGCTGTGAACGACGTTAGCGTTTTACAC
GCAATGAGTTAGCGCCTCCTTGCATGATCTGTCTTGTAGACAATTGTCTA
CCAAGTCTTCCAATCTCCTCTTGCAAGCCCAGCTCTATTTGCCGCACCCG
AATCTGCCGCCCCCTTACCTCCGTCCCCTACCACCCTGCCCCCCTCCACC
CATCACTACCCTCCCTTATTGTGCACTGCCAATGCTCCTGTAACCCTTTA
CTTGTTCTTCCCCCCCTTACCTCGTCATCACTTTTCCCACCTCCCC
CGATCAAGCGGGAGAACTCGGGAACACAGGGCGTCCAXXXXXXXXXXXXX
XXXXXXXXXXXXXXAACATTCTCTGATTCTAATCTATAGCATCTGCCCAC
TGTGGCACTAAGCACCTAACATCTCACCCAGGACCTAGCAAAGAACAAGT
AACAAAAGAGATGTATGCTCAGACCGGTCCACTATTCATCGGGAGAAGTA
ATGAGGCTTGGTGCTAAAGATTTTCTCTAGCGTGAAAAAGACTAAGAAGA
TGCCCAGGGCCGAACAAAGAAGATACTCGGAGTCAGAGGGACCTTGCAGA
AAAAAGCAAAAGACCTACAGAAGGTGGATGCGAACTCTAGGTCAAAANTC
CAAAAACGCGCTTTGATGAGACAAGAAAAGGGAATGCGCGAGACGACAGA
TCACGAGCCACAGGTCGGCCCCCCCGAATCGAAAAATGGGGACTCGAAAG
TCTGCTGACCGGTGTGGCAAAGGCGGAGATGGTGGAACAGCGTGAAAATG
GAAACAAAAAGGGCAAAGGCAAAATGGGAAACAAGGTGAATAAAAAAGGG
TGAAGACACTAACTGCAGAAAGGGGGCAAACGTGAACAATCCCCACAGCG
GCGAAAAGAATGGAAAAAAAGAGGAAAAAAGAAAAAAAAGAAAAGGGACA
AAAGGGGGGGGACACAAATGGGAAATGGGGACACGGGGACAAACCGGGAA
GGGCGAGGGGAAAAACGGAGGCGGACACGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_k22.b1 MSMg01no151_k22.b1 CHROMAT_FILE:
MSMg01no151_k22.b1 PHD_FILE: MSMg01no151_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:33 2005
         (341 letters)



>mm_chr1_42736899_42737638
          Length = 740

 Score =  603 bits (312), Expect = e-177
 Identities = 333/340 (97%), Gaps = 1/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctttcctttctatttgttactaaaaacaaaaacaaaaagcaaacaaacaaaaaaaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 539 cctttcctttctatttgttactaaaaacaaaaacaaaaagcaaacaaac-aaaaaaccat 481

                                                                       
Query: 61  cctgaaaactgtgcaatctaagttagctcttctaagtaaatttggaagattgggactaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cctgaaaactgtgcaatctaagttagctcttctaagtaaatttggaagattgggactaag 421

                                                                       
Query: 121 tgtcagccatcccgcaatgcttctttctagcaacgttggcagagatggacatagggccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgtcagccatcccgcaatgcttctttctagcaacgttggcagagatggacatagggccct 361

                                                                       
Query: 181 gtacagaattgagatcctcgtgcctgtgaacatttactcctatttacataaagggacttg 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 360 gtacagaattgagatcctcgtgcctgtgaacatttacccctatttacataaagggacttg 301

                                                                       
Query: 241 aggggcccactttaccaggctttaccatggctgctcattgaactgttaggtatctggtca 300
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 300 aggggcccactttaccaggctttcccaaggctgctcattgaactgttaggtatctggtca 241

                                                   
Query: 301 cctacttacttggactcagtagagtcacgcacacatcata 340
           |||| |||||||||||||| ||||||||| ||||||||||
Sbjct: 240 cctatttacttggactcaggagagtcacgtacacatcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 740
Length adjustment: 9
Effective length of query: 332
Effective length of database: 731
Effective search space:   242692
Effective search space used:   242692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)