BAC Information

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BAC

Clone NameMSMg01-152E03
Chromosome1 (Build37)
Map Location 47,801,577 - 47,801,868
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc39a10, EG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152E03.T7 (MSMg01no152_e03.b1)MSMg01-152E03.TJ (MSMg01no152_e03.g1)
ACCAG354193AG354194
length728760
length of high quality
(start - end)
310 (122 - 431)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no152_e03.b1 PHD_FILE: MSMg01no152_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:18 2005CHROMAT_FILE: MSMg01no152_e03.g1 PHD_FILE: MSMg01no152_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGACAATCCGCGG
AATTCTCAATAGTATAACTTCAACGGCTGAGAAACAAATGTTCAATATTC
TTAGCCAGCAGAGAAATGCAAATCAAAACTCCTTTGAGATTTTTTTTTCT
TTTAACTATCAGAAAGACTAAGGTCAATAAGAAAAATGACAGCTCATCAT
GCTGGTGATAATATGGAACAAGAGGAACATTTTTCCATTGTTGATGGGGA
TAAAAAGTAATATAGCCACTTTGGAAATCAATTTGGGGTTTACTCACAAA
ATTGGGAATATACCTCAAGACCCAGCAAAACCATTCTTGTGCATATACCC
TAAGGGATCTCCGTCACACCAAAATAACACTTGATCAACTATGCTCATAG
AACCTTCAGCCAAAGAATGGATAAAGAAAATGTGGTACATTGACACAATG
GAACATTACCTGTTAAAAACAATGACATCATGAAATTTGCAGGCAAATGG
ATGGAACTATAAAAGATCATCCTGAGTAAGGTAATCCCGACATAGAAAGA
CAAACATGGTATGTACTCATTTAGAAGTTAACATTAGCAGCTACACAATG
GACAATCATACTACAATCCCACAGACCAGAGAAGCTAAGTAACGAGGACT
ACTCCCGGGGTAAAAGATGTATCCCTCTGGGAAGGGGAAATACTATAGAT
TTTGCACGTGGACATAGGAATATGGCGC
CGATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCGCACTTCTCTCTAAAACCATCAATATGAGTGGTAT
TAAAGTTAATATGTTTGCTTACCTGATGAGTCATCTGCTTTGATACTTTT
CCTATACACATTAACTAATGGCTATATTCAATTTAAGTTTTTTTCAATGC
ATTTATTTTATATCTGTATCTGTTGTTCTTTCTTGCACAAACTATAACTC
CCTTTGGAAAGGGTCTTAATACCTTATTCCTCTCAGGGGAGGGATATTGG
AATTTGATTGGAAATTGATGTTTTCTATGGAAGGAAGAATTTATCTCCTT
TTGACATGTGTTTGCAAAGGCCTCCCTCCACACTCACACATATATTGGCA
ATACTAATTGCTCTTAGAGGGTTATTAGCCCCCACAAAATCACCGCCTAA
ATTTGCAAAGAAGATATTATGGCTACACTACAGGAAGTTGGAGGGAACCA
CAATTGGCTACCCGACCCAAATGCACTTATGCATCCCATGAACAATTCCT
ACCAGATAATCACAATTTTATTACATGTTTAAAACTCCCCCACTGTCGCA
AATGCGACACGCTCAGCCCGGCCTCCCATGTTGAAACTACGGATAACCCC
CCCCCCGCTACCCCTCTGGATGGTCACTTATTAGCAATTCTCCACCCTCG
TTTCTCACGATTCTTTCCACCCCTTTGCCCATTCCCCCTGCCAATACACC
CAAACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_e03.g1 MSMg01no152_e03.g1 CHROMAT_FILE:
MSMg01no152_e03.g1 PHD_FILE: MSMg01no152_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:18 2005
         (292 letters)



>mm_chr1_47801377_47802068
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctaaaaccatcaatatgagtggtattaaagttaatatgtttgcttacctgatgagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctctaaaaccatcaatatgagtggtattaaagttaatatgtttgcttacctgatgagtca 433

                                                                       
Query: 61  tctgctttgatacttttcctatacacattaactaatggctatattcaatttaagtttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tctgctttgatacttttcctatacacattaactaatggctatattcaatttaagtttttt 373

                                                                       
Query: 121 tcaatgcatttattttatatctgtatctgttgttctttcttgcacaaactataactccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcaatgcatttattttatatctgtatctgttgttctttcttgcacaaactataactccct 313

                                                                       
Query: 181 ttggaaagggtcttaataccttattcctctcaggggagggatattggaatttgattggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttggaaagggtcttaataccttattcctctcaggggagggatattggaatttgattggaa 253

                                                               
Query: 241 attgatgttttctatggaaggaagaatttatctccttttgacatgtgtttgc 292
           |||||||  |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 252 attgatggcttctatgggaggaagaatttatctccttttgacatgtgtttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)