BAC Information

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BAC

Clone NameMSMg01-152L12
Chromosome1 (Build37)
Map Location 83,849,882 - 83,951,804
singlet/doubletdoublet
Overlap genenone
Upstream geneHrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152L12.T7 (MSMg01no152_l12.b1)MSMg01-152L12.TJ (MSMg01no152_l12.g1)
ACCAG354519AG354520
length741728
length of high quality
(start - end)		475 (77 - 551)560 (78 - 637)
definitionCHROMAT_FILE: MSMg01no152_l12.b1 PHD_FILE: MSMg01no152_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:53 2005CHROMAT_FILE: MSMg01no152_l12.g1 PHD_FILE: MSMg01no152_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,849,882 - 83,850,356)(83,951,245 - 83,951,804)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGAAGATCC
GCGGAATTCTTGAAATTTTCTATGAAATATTTTAGCTAACAAAAATCACC
ATCATACTTCAGATTATGTTTGAAGTCCTTGTTTATGAAATGATAAGGTA
TACCAGGAAGAATCACCTAAACCAGTGCCTCTCCATCTTCCTAATGCTTT
GACCCTTTAATCCAGTGCCTCCCATTGTGGTGCTCCCCAGCCATACAGCT
ATTTTTGTTGCTACTTTATAACTGTAATGTTGCTACTGTTATGAAGTATA
ATGTTAATATCTGATATTCTGATGTTTGTAAGTAACCCATGTGAAAGGGC
CATTCAACACCCAAAGAGGTCACAGCCCACAGGTTGAGAGCTGCTGACCT
AAATTCACATCTTCCTGATATCATTGTTCATTGATACGGATATCTGTGAG
GCATTTATTACGGGATGAAAAAGCTAGGAGGCAGTTGAGCATGTGATATA
GTTTGCAAATCCGGTCTAAGTATGTGCCAGAGTTTTAGTAAGGATGTTTA
AGGGTGGCAATGAGTATGTGGGTGTTTTGCTTTCTCTCTACTTTACTTAT
CTAACACATAATGTCTTGCTTCTGACTGCTTAATGTACTTCACATCCAAC
CCATCTTCCCCGTTTTTTATTCGCCCTCCTTCTTCTTACTCTCTTTTTGC
TGTCTCACTTTCATCTTCCCTCATTCTATCATCCTTTCCTT

NTCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATCATTGACGCCAATTCTTA
ATTGGTGGTCTGAAGAGAAATTCTGTGTTGAATTACCAACTAGTTACAAT
AGAATCATTTCCAACAGTAATTAGGGATGATGGAAAATTAATCTGAAATG
TAGAACCAAATTTTTCATGTTTTCAAGATGAAAAATAGAGGCCAGTTTAT
GTAACCCTTGGAATGTTGAAAGATCTGTTAGTACTAAAGCATGGGATATA
TATTATGTGTGAGGGTACCGGCTCTTTCTCCCCTTTCTGCTACTGTAAGC
TTCCCACAGCATTATATGAGTAACTGGGGTAAGTTCCACACTGTGAGGTT
GATTATTCTTGATAAGAGGGCTCCTCCTGCTGCAAGCTTGACTTGGCTTA
GCATATGTGATATGACATCTTGACTCTGTGATTCAGTGACAGTTACATAC
ATCAAACTTTTGTAAATCCAAATCACAGACTTGTTCGCCATTATCTGAAC
TGATGGATTAGTAATGGAATTTGATCTGTTGAACTAAGATACTTGGCACT
ATTTCTTATCAAAGGGAGAGACATTATCTTACTTAGACAAGATGAAGTAA
TGACATTTGTTTGCAATGAGGAGCCACTCTTAATTGTTAACATCTGTTTG
GGACACATTATAAAGCATTGGCTTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_l12.b1 MSMg01no152_l12.b1 CHROMAT_FILE:
MSMg01no152_l12.b1 PHD_FILE: MSMg01no152_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:53 2005
         (475 letters)



>mm_chr1_83849682_83850556
          Length = 875

 Score =  872 bits (451), Expect = 0.0
 Identities = 469/475 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattttagctaacaaaaatcaccatcatacttcagattatgtttgaagtccttgtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattttagctaacaaaaatcaccatcatacttcagattatgtttgaagtccttgtttat 260

                                                                       
Query: 61  gaaatgataaggtataccaggaagaatcacctaaaccagtgcctctccatcttcctaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatgataaggtataccaggaagaatcacctaaaccagtgcctctccatcttcctaatg 320

                                                                       
Query: 121 ctttgaccctttaatccagtgcctcccattgtggtgctccccagccatacagctattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgaccctttaatccagtgcctcccattgtggtgctccccagccatacagctattttt 380

                                                                       
Query: 181 gttgctactttataactgtaatgttgctactgttatgaagtataatgttaatatctgata 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gttgctactttataactgtaatgttgctactgttataaagtataatgttaatatctgata 440

                                                                       
Query: 241 ttctgatgtttgtaagtaacccatgtgaaagggccattcaacacccaaagaggtcacagc 300
           |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ttctgatggtcgtaagtaacccatgtgaaagggccattcaacacccaaaggggtcacagc 500

                                                                       
Query: 301 ccacaggttgagagctgctgacctaaattcacatcttcctgatatcattgttcattgata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacaggttgagagctgctgacctaaattcacatcttcctgatatcattgttcattgata 560

                                                                       
Query: 361 cggatatctgtgaggcatttattacgggatgaaaaagctaggaggcagttgagcatgtga 420
           |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 561 cggatatctgtgaggcatttattaagggatgaaaaagccaggaggcagttgagcatgtga 620

                                                                  
Query: 421 tatagtttgcaaatccggtctaagtatgtgccagagttttagtaaggatgtttaa 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatagtttgcaaatccggtctaagtatgtgccagagttttagtaaggatgtttaa 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no152_l12.g1 MSMg01no152_l12.g1 CHROMAT_FILE:
MSMg01no152_l12.g1 PHD_FILE: MSMg01no152_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:53 2005
         (560 letters)



>mm_chr1_83951045_83952004
          Length = 960

 Score = 1036 bits (536), Expect = 0.0
 Identities = 554/560 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatcattgacgccaattcttaattggtggtctgaagagaaattctgtgttgaattacc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tttatcattgacgccaattcctaattggtggtctgaagagaaattctgtgttgaattacc 701

                                                                       
Query: 61  aactagttacaatagaatcatttccaacagtaattagggatgatggaaaattaatctgaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 700 aactagttacaatagaatcatttccaacagtaattagggatgatggaatattaatctgaa 641

                                                                       
Query: 121 atgtagaaccaaatttttcatgttttcaagatgaaaaatagaggccagtttatgtaaccc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 640 atgtagaaccaaatttttcatgttttcaaggtgaaaaatagaggccagtttatgtaaccc 581

                                                                       
Query: 181 ttggaatgttgaaagatctgttagtactaaagcatgggatatatattatgtgtgagggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 580 ttggaatgttgaaagatctgttagtactaaagcatgggatatatattatgtgtgagggtt 521

                                                                       
Query: 241 ccggctctttctcccctttctgctactgtaagcttcccacagcattatatgagtaactgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccggctctttctcccctttctgctactgtaagcttcccacagcattatatgagtaactgg 461

                                                                       
Query: 301 ggtaagttccacactgtgaggttgattattcttgataagagggctcctcctgctgcaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ggtaagttccacactgtgaggttgattattcttgataagagggctcctcctgctgcaagc 401

                                                                       
Query: 361 ttgacttggcttagcatatgtgatatgacatcttgactctgtgattcagtgacagttaca 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttgacttggcttagcatatatgatatgacatcttgactctgtgattcagtgacagttaca 341

                                                                       
Query: 421 tacatcaaacttttgtaaatccaaatcacagacttgttcgccattatctgaactgatgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tacatcaaacttttgtaaatccaaatcacagacttgttcgccattatctgaactgatgga 281

                                                                       
Query: 481 ttagtaatggaatttgatctgttgaactaagatacttggcactatttcttatcaaaggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttagtaatggaatttgatctgttgaactaagatacttggcactatttcttatcaaaggga 221

                               
Query: 541 gagacattatcttacttaga 560
           ||||||| ||||||||||||
Sbjct: 220 gagacatcatcttacttaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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