BAC Information

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BAC

Clone NameMSMg01-153B07
Chromosome1 (Build37)
Map Location 174,163,389 - 174,315,223
singlet/doubletdoublet
Overlap geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
Upstream geneFcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Downstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153B07.T7 (MSMg01no153_b07.b1)MSMg01-153B07.TJ (MSMg01no153_b07.g1)
ACCAG354779AG354780
length732739
length of high quality
(start - end)
418 (120 - 537)368 (76 - 443)
definitionCHROMAT_FILE: MSMg01no153_b07.b1 PHD_FILE: MSMg01no153_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:22 2005CHROMAT_FILE: MSMg01no153_b07.g1 PHD_FILE: MSMg01no153_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,314,872 - 174,315,223)(174,163,389 - 174,163,735)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACCGCGG
AATTCAATTCAGTTTCTCCCACACACTCTCTCCTTCCTCTATCCTTTCTC
TCCTATCTAGTGATGGGAGTGAAACCAGGGGCATAAAGAGTAGGAAAAAG
AACCCACAAAGTAGCCAAGACCAGCTACAAGAGGATTTGCATGTGAAAAA
AATTATTAAATATCTAGAAGTCACTAAGAGAAATGTTTAAGAACAATAGA
AATAGGCTTGAAATTAAGAGCCCTTGCTGGTCTTCCAGAAGGCCTGGGTT
CAGTTCCCAGTACCTTACACTTGTAATCCCATAGCCAGAGGAGCCAAATC
TCTTCTTTCGGCCTCTGAGAGCATCAAGCACACACAGGAACTTGGTAGAA
GTGAAGAACTGTCCTTTACAAGAACTGTCCCTTACACATCAAGAAGGTCA
AATTGATTGGCAGGACATCTGCCAGACTTAAGTGTTGAGTCCCATTTATT
TTGCAGAAATCATCTGCTGGAGCTGGGCACTCTGGGAAAAAAAACAAACG
TCTAACACAGTGAAAAGGCCATGTTAGTTTAGTCAGAAACTTTCACTTAA
ATTCTAGTTCTGGCTGGCTTTATCAGCCAGCCATTTAATCTTTAAACCAC
TAAGCTTGTCTATATAAGTAGGTCCAAACACCAAATCTGAAGCGTTGTCC
TTAAACCTCAACTTGCGCCCGAGTAAAAGAAA
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGGACTGAGGGTGATTGAGTTCA
TGCAGTTACTTTGCAGATAATTTCCGATTGGTCTTAGCAGGTCCGAATCA
TTCAGACAAACAAGTTTCTCTGGGGCCCTGCTGAAGACTGAAGCATTCAG
TTTTCGAGGCAATGGCTACCTCACTCTGAAAACTGTATTGAAGTAAGTAC
ATGGGAATCCTAGCAAGCCCATAAAGAAGATATGATGTATGCCAGGGTCT
CAGTCTCCCTGGCAAATCTGAACTACGCTCCAACTTCGTCTTTAAAAAGA
ACACTTAAGTATTAGCTGAATCTTTTTCTTTCTTTTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTT
CTTTCTTAAACAAAAGGTCTCCCATTTTACACCGGTAGGCCTCCCAATTG
TTGTGCACCCAAGGCTGACTGATCTTCCTGCCTCCCTCATCTGAGCGCTG
TGGTAACAAGCATTCTATGTGAAGTTGGATTTTATGCCTTCGCTCTTTAC
CCCTCGCCGGATGACCCATTCTAAAAATTCATTTTCCCTCCATCCGCTAT
TTGATGGACTTGTTCAAGCCTTTTGTCCCTTCAACTTCTTTCGCTTCTCC
CTCCCCTGCCTGGTTTACGTTTGCTTCGTAACTACCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_b07.b1 MSMg01no153_b07.b1 CHROMAT_FILE:
MSMg01no153_b07.b1 PHD_FILE: MSMg01no153_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:22 2005
         (418 letters)



>mm_chr1_174314406_174315223
          Length = 818

 Score =  681 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Minus

                                                                       
Query: 67  tttgcatgtgaaaaaaattattaaatatctagaagtcactaagagaaatgtttaagaaca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tttgcatgtgaaaaaaattattaaatatctagaagtcactaagagaaatgtttaagaaca 759

                                                                       
Query: 127 atagaaataggcttgaaattaagagcccttgctggtcttccagaaggcctgggttcagtt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 atagaaataggcttgaaattaagagcccttgctggtcttccagaaggcctgggttcagtt 699

                                                                       
Query: 187 cccagtaccttacacttgtaatcccatagccagaggagccaaatctcttctttcggcctc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cccagtaccttacacttgtaatcccatagccagaggagccaaatctcttctttcggcctc 639

                                                                       
Query: 247 tgagagcatcaagcacacacaggaacttggtagaagtgaagaactgtcctttacaagaac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgagagcatcaagcacacacaggaacttggtagaagtgaagaactgtcctttacaagaac 579

                                                                       
Query: 307 tgtcccttacacatcaagaaggtcaaattgattggcaggacatctgccagacttaagtgt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgtcccttacacatcaagaaggtcaaattgattggcaggacatctgccagacttaagtgt 519

                                                               
Query: 367 tgagtcccatttattttgcagaaatcatctgctggagctgggcactctggga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgagtcccatttattttgcagaaatcatctgctggagctgggcactctggga 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no153_b07.g1 MSMg01no153_b07.g1 CHROMAT_FILE:
MSMg01no153_b07.g1 PHD_FILE: MSMg01no153_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:22 2005
         (368 letters)



>mm_chr1_174163189_174163956
          Length = 768

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggactgagggtgattgagttcatgcagttactttgcagataatttccgattggtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggactgagggtgattgagttcatgcagttactttgcagataatttccgattggtctt 260

                                                                       
Query: 61  agcaggtccgaatcattcagacaaacaagtttctctggggccctgctgaagactgaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaggtccgaatcattcagacaaacaagtttctctggggccctgctgaagactgaagca 320

                                                                       
Query: 121 ttcagttttcgaggcaatggctacctcactctgaaaactgtattgaagtaagtacatggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagttttcgaggcaatggctacctcactctgaaaactgtattgaagtaagtacatggg 380

                                                                       
Query: 181 aatcctagcaagcccataaagaagatatgatgtatgccagggtctcagtctccctggcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcctagcaagcccataaagaagatatgatgtatgccagggtctcagtctccctggcaa 440

                                                                       
Query: 241 atctgaactacgctccaacttcgtctttaaaaagaacacttaagtattagctgaatcttt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgaacaacgctccaacttcgtctttaaaaagaacacttaagtattagctgaatcttt 500

                                                          
Query: 301 ttctttcttttctctctctctctctctctctctctctctctctctct 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctttcttttctctctctctctctctctctctctctctctctctct 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)