BAC Information

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BAC

Clone NameMSMg01-153B09
Chromosome1 (Build37)
Map Location 74,777,232 - 74,777,759
singlet/doubletsinglet
Overlap geneCyp27a1
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4
Downstream genePrkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153B09.T7 (MSMg01no153_b09.b1)MSMg01-153B09.TJ (MSMg01no153_b09.g1)
ACCAG354783AG354784
length722721
length of high quality
(start - end)
---555 (76 - 630)
definitionCHROMAT_FILE: MSMg01no153_b09.b1 PHD_FILE: MSMg01no153_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:23 2005CHROMAT_FILE: MSMg01no153_b09.g1 PHD_FILE: MSMg01no153_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAATCCGCGG
AATTCAACCTACTTCCCAGCCATTTCTCTTTCCTTATAGAACGCCCGGTT
TAGATCACTACTGAAGTCCCTTACCATGCGTTCGATGTTGTTCAGAGTCC
TGCTTTCAGCTAGGTCTCCATCATACACTTGGTATTCCCTGCACATTCGA
CACTGCATACCGACTGCCTTCTAAAACAAGAGGAGCAATCACATCCTGCT
CCCTGTCTACCTCCCCATACTTTGGATGGCTGCGGTCACAGGTTACAAGC
GTTAACTGATGCTCAGCAATGTGCCTTAATAAATGAGGAAAGAGCTGCCT
AAGGAGAGGCGTGCATATGCTGCAAACCTGCATGTCATATATATGTCACT
ATACACATGTATGCCGTTCTTCCTGGACAGGCGTAAGAATCTCACACGGT
AAGAATCTCGAACTAATACGATGAAAGGCCACCAGACTGGAGGGATGGAT
ATGAAAGTCTAGGCTGACCAGGAGAGACAGTGGGTCTGGTGATGTCTACC
TGCTTGGTGACAACATGCTGCCGCTCCTGTACCTGTTCCTGTGTAGTCAG
CTCTTGTTCCATGTGCTGGATGCACCTGGCAAGGTAATGCCAGCGCAAGT
ATTGCCAACAGGGTGTTTTGTTTAAGGTCTCCTTCTCCTGAAGGAAGACC
GAAGCCCGGTTCCTGTGTTTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGGGAGGGGGGAAGAAATTCTAA
AAAAAGAATAAGTTGAGACTGGAAATGCAAGGTCAAATACAAAGTAGCCT
GTGTTTTGTTTGTTTGTTTGTTTTAAAAAACAACAACAAAGTGATGTGTG
TGTATTATGTAACTTCTAAGTCTTTTCAAAGGCAGAGAAAGTACCTAGAA
AGAACCCACAGCACCCTGCTTGGACCCTGTACAGACACATCTGAGACTGG
AAGTGGGGGTTGTGAGGAGAAGACAGTTTTTTCTCTGTGGAATAGAGCCC
TATCTGTCCCAAAACGCACTCTATAGATTAGGCTGGCTTTGAACTCACAG
AGATCCAAAGTGCTGGGATTAAGGCATGTGCCAGCCAGCCTCCACACCTG
GCTATATCGTAGACTATCTAAGGCACTTGCTAGTTGATGATGGTCTTACT
CTAGCGTCTGGTGAGAAATTAGCATTGCTAAGAGCTAAGGGTGTAGCTAA
AGCCATTCTGTGATACAGAGCCTGCTTATCTTGAGCAAGACCCTGGCTGC
TACAATGTATTGATAGTTGCTGAAAATGAGAGATAAGTTACACCCACATC
GTGAAAGAAAATAAAATCCCATGGTTTTCCAGTCCCTTCCTCTTTCCCAG
TTGTTGCTGAAGAGACTCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_b09.g1 MSMg01no153_b09.g1 CHROMAT_FILE:
MSMg01no153_b09.g1 PHD_FILE: MSMg01no153_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:23 2005
         (555 letters)



>mm_chr1_74777232_74778186
          Length = 955

 Score =  862 bits (446), Expect = 0.0
 Identities = 512/554 (92%), Gaps = 36/554 (6%)
 Strand = Plus / Minus

                                                                       
Query: 11  gggaagaaattctaaaaaaagaataagttgagactggaaatgcaaggtcaaatacaaagt 70
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gggaagaaattctaagaaaagaataagttgagactggaaatgcaaggtcaaatacaaagt 469

                                                                       
Query: 71  agcctgtgt--------tttgtttgtttgtttgttttaaaaaacaacaacaaagtgatgt 122
           |||||||||        |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agcctgtgttttgtttgtttgtttgtttgtttgttttaaaaaacaacaacaaagtgatgt 409

                                                                       
Query: 123 gtgtgtattatgtaacttctaagtcttttcaaaggcagagaaagtacctagaaagaaccc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtgtgtattatgtaacttctaagtcttttcaaaggcagagaaagtacctagaaagaaccc 349

                                                                       
Query: 183 acagcaccctgcttggaccctgtacagacacatctgagactggaagtgggggttgtgagg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acagcaccctgcttggaccctgtacagacacatctgagactggaagtgggggttgtgagg 289

                                                                       
Query: 243 agaagacag--ttttttctctgtggaatagagccctatctgtcccaaaacgcactctata 300
           |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agaagacagggttt---ctctgtggaatagagccctatctgtcccaaaacgcactctata 232

                                                                       
Query: 301 gattaggctggctttgaactcacagagatccaaagtgctgggattaaggcatgtgccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gattaggctggctttgaactcacagagatccaaagtgctgggattaaggcatgtgccagc 172

                                                                       
Query: 361 cagcctccacacctggctatatcgtagactatctaaggcacttgctagttgatgatggtc 420
           |    ||||||                ||||||||||||||||||||| ||| |   |||
Sbjct: 171 c----tccaca----------------actatctaaggcacttgctagctgacg---gtc 135

                                                                       
Query: 421 ttactctagcgtctggtgagaaattagcattgctaagagctaagggtgtagctaaagcca 480
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 134 ttattctagcgtctggtgagaaattagcattgctaagagctaagggcgtagctaaagcca 75

                                                                       
Query: 481 ttctgtgatacagagcctgcttatcttgagcaagaccctggctgctacaatgtattgata 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 74  ttctgtgatacagagcctgcttaccttgagcaagaccctggctgctacaatgtattgata 15

                         
Query: 541 gttgctgaaaatga 554
           ||||||||||||||
Sbjct: 14  gttgctgaaaatga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)