TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCAGCAAGAATTACCATCCTTGATGAAAAATACTCCAAACAAATCCAG
AAAGACAAAAACTTAAAGAATAAGCATGTTATATATAATGAGCAGTTCAT
TGTTTCCCAGGACATAAGTCCTTAGGCTAGATAAGGATAACTTTTAGGAA
TGAGGGGTTTAATAAAAGGAAAAGGATCATTGAGAACAGCTGAAGACAGT
AAAATTTAGGCATATGTATCAGGTTTTTTGTTTTGTTTTGTTTTGTTTCC
TTGACAAAGAAAGCCATAGGAGTGCCCAATTATAATGGTATAGTTCAATA
AACAAAAATTTTAGTCCAATAATGTGTCACAAAGGAGAAAATTACAAGGA
TCATTTCAGTATGAATATGGCTTTATGTGGCATGAGACATTAGATGGCAT
GGCTTTACCTTGGTCAAAACCATGGTCAAATACTGAATTACAGGAGAGAA
GATAGGACAACTTGAAATCAACAATAGTAACAATGCAAGTGTTACGTTTG
AAACCATTATTCCATTATGATACGTGGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTTTTGTAGTGTAGAAATTGTAAATTTCAAGAGTGCCAGGCTTTTT
GTTTTTTGCTTTTTGGTCTTTTTTAGAATTTCATCCCTAGCCAGTAGACA
TTCAGACATGTAATCAAAAATATTACATTGATACGAGGA

ATTTTTCCCTTTATTTACCTCCATCTCTCACCCTCCCCCCCTCCCCCCCC
CCCCTTNTTATCTATGACXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAA
ACTGTTANGGTGAACTATAGATTTTCCCGCACATTTCTGTGTCCTGACTC
GGAGTTAGAGCCTGCGCACATAATACATGTCTGAGTTAAAATGAATCTGA
TTTTTCTGAGAGTGTTTCTAAATACATTGCCTACTTGAGATTACACTGCT
AGGTCATAGTTTTATTTTATCTTGCCGTATACCGCATCCTGCCGTATGGT
GCATATTGGATAAAAGTCTACCGTTCCCCACCTCACGCTACCTAGAAACC
GTTCACTTTACTCTCTCCATGTCCCTAATTCTCACAACTTAGTATTGCCC
TACTTTATATGATCCTTTTTTTCTACTTGACGGCTCTTAACCAATTCTCT
TGAAAAATATTCACTCTCTTTCCCCTTACTACCACTCTGAACCCTGTATA
TCCTCCCACCTAACGCCACTATTCTCTAGTGACTATTCCCAATCACCGAT
TTTCCTTTTTTTTGTATACACTGAATACCTACCTCCCTACTGTTTGACCA
ACTTACCCCATCTTCCCCAATTGCCATTTGCCTTAATCCGACCCCCCCAT
TGCCCCCTCTACCACCCTTATCTTCCCGCGCTCCATATCTTTCCTTTCTT
ACCTTTTGCCCTCCTCTCCCTCCCGTTTCTCCCCATCCATCATCTTTTCA
CTTAACTATTCTGCCTTCCCAACGTCTTCCCCATTCCCCTAACCATTCAT
ATTCATATTTCTTACCCCCCN

Query= MSMg01no153_d02.b1 MSMg01no153_d02.b1 CHROMAT_FILE:
MSMg01no153_d02.b1 PHD_FILE: MSMg01no153_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:30 2005
         (626 letters)



>mm_chr1_68894089_68895114
          Length = 1026

 Score = 1106 bits (572), Expect = 0.0
 Identities = 611/638 (95%), Gaps = 26/638 (4%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcagcaagaa----ttaccatccttgatgaaaaatactccaaacaaatccagaaa 61
           |||||||||||||||    |    ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattcagcaagaaaaagt----atccttgatgaaaaatactccaaacaaatccagaaa 256

                                                                       
Query: 62  gacaaaaacttaaagaataagcatgttatatataatgagcagttcattgtttcccaggac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gacaaaaacttaaagaataagcatgttatatataatgagcagttcattgtttcccaggac 316

                                                                       
Query: 122 ataagtccttaggctagataaggataacttttaggaatgaggggtttaataaaaggaaaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ataagtccttaggctagataaggataacttttaggaatgaggggtttaataaaaggaaaa 376

                                                                       
Query: 182 ggatcattgagaacagctgaagacagtaaaatttaggcatatgtatcaggttttttgttt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggatcattgagaacagctgaagacagtaaaatttaggcatatgtatcaggttttttgttt 436

                                                                       
Query: 242 tgttttgttttgttt-----ccttgacaaagaaagccataggagtgcccaattataatgg 296
           |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgttttgttttgttttgtttccttgacaaagaaagccataggagtgcccaattataatgg 496

                                                                       
Query: 297 tatagttcaataaacaaaaattttagtccaataatgtgtcacaaaggagaaaattacaag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tatagttcaataaacaaaaattttagtccaataatgtgtcacaaaggagaaaattacaag 556

                                                                       
Query: 357 gatcatttcagtatgaatatggctttatgtggcatgagacattagatggcatggctttac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gatcatttcagtatgaatatggctttatgtggcatgagacattagatggcatggctttac 616

                                                                       
Query: 417 cttggtcaaaaccatggtcaaatactgaattacaggagagaagataggacaacttgaaat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cttggtcaaaaccatggtcaaatactgaattacaggagagaagataggacaacttgaaat 676

                                                                       
Query: 477 caacaatagtaacaatgcaagtgttacgtttgaaaccattattccattatgatacgtggt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caacaatagtaacaatgcaagtgttacgtttgaaaccattattccattatgatacgtggt 736

                                                                       
Query: 537 gtgtgtgtgtgtgtgtgtgtgtgtgtgt------------tttgtagtgtagaaattgta 584
           ||||||||||||||||||||||||||||            ||||||||||||||||||||
Sbjct: 737 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgtagtgtagaaattgta 796

                                                 
Query: 585 aatttcaagagtgccaggctttttgttttttgcttttt 622
           |||||||||||||||||| ||||||||||||| |||||
Sbjct: 797 aatttcaagagtgccaggttttttgttttttg-ttttt 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)