BAC Information

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BAC

Clone NameMSMg01-153H08
Chromosome1 (Build37)
Map Location 180,111,835 - 180,112,167
singlet/doubletsinglet
Overlap genenone
Upstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262
Downstream gene5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153H08.T7 (MSMg01no153_h08.b1)MSMg01-153H08.TJ (MSMg01no153_h08.g1)
ACCAG355053AG355054
length716793
length of high quality
(start - end)
565 (45 - 609)333 (137 - 469)
definitionCHROMAT_FILE: MSMg01no153_h08.b1 PHD_FILE: MSMg01no153_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:50 2005CHROMAT_FILE: MSMg01no153_h08.g1 PHD_FILE: MSMg01no153_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGC
GGAATTCTAGGTTTACAGAAACAACCTGTCTCTGTGGGATTCCCTAACTT
TTCTTATGGTAAACTGTATCTGGCTGAGACTGTCCTTTCTATCCTAGTAA
ACAACTAACAGAAAAGCCTGGAGCTGTAGGCTCTGACTTTATAATGCTAA
TTATTACTGAATAGGTAACTTTCTAGTTGAATTTTAAGTAGGGTGTTGGA
AACCTGGCTAAGTTTGACTGAACAAATTTGAAATACACTTTATTAAGAAT
AACACTGAGTTGATATTCCTTTGCATTTTTGGATGACAGGCGGGAAACAG
AGAGAAGGGGGTGGCGACTGGCTCCGTAGTACAAGGCCAATTGGCTTTTA
TTTTGGGGTGGGAGGCAGTGAAGACAGTACGGTCTCCAACCTCTCTCCCC
CCTATTAAGTTAAATAAGGCAACGCTTAACTGAGGTGATCAAATGATTTT
CTCATCCGTAGATGAGTGGGCTTTTAACCTTGGCTTGGGTGGACATTGAC
CCGATTCCTCCCGTGGGTGCTGTCACGACCCACACCTGCGGCTCTTGCTA
TCTTTTGTCGAGGGTAGGCACAGCCGTATATATTTTTTGGTTTTTAGCCC
ATATTAACATACCAACCTCCTTTTTTAAACCGGGTATAAACTCCCTGAAT
ACTCACAATCGGTCAC
TTTTTACCTCTTTTTTTTCTCAATCCTCAAGCCCACCCCCTCTCTCCCCA
TCCCCNNNNNCCTATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGACTAACTCAG
TTGAATTTGAAGCCAGTATTGAAGAATAACATCCAGTTTCACTAGTAGAT
CTTGAGACTGTCCATTTTCCATTTCCAAAGTACCAGCCACCCAAAGAGAT
AGCACAGCTTGGAATGTCAAGGGATCCCTTTTAATCTGCATGTCTTTAGT
TTTGGAATGACTTTTGTTAGTGATGACCACCAACTTGTGTCTTCCCAGAT
GGAAAGGAAAGTGTTTGGCAAAGTCTTTGAAAATAGCAGCTCATGTTACC
ACTACTGTCTGTGTTTGATGGCAGTGATGGCTATAATCAACTCCTCTAGG
CTAGTGGAGTTTTTGTTGTTGTTGCACTGTTTTTAGAAGCAGGGTTTCTC
TTTGCAGTCTAGCCTTTGTTTGAATTCCCCATCCACTTGCTCTGTCCTGA
TCCTGAGAAAAGGGATTATACCTTTTTTTAAAAAAAGCCCTACAGGGCTA
GCGCGTGCTTCACGTCTTCAATCGCCAGAACCTACCAGGCATCGCCCCAC
GGTCTGCCTTATTTCCCGCACCTTGATGGCCATCCTTGGTCCCACTTAAC
TGTATTTCCAAGGACCAGCAGGGTCCCTCTTTTATTATAACCCCTGGCCC
CAGCTCATCCCCTTCCCTATCTATCTTATTTTATCTTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_h08.g1 MSMg01no153_h08.g1 CHROMAT_FILE:
MSMg01no153_h08.g1 PHD_FILE: MSMg01no153_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:50 2005
         (333 letters)



>mm_chr1_180111635_180112367
          Length = 733

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgactaactcagttgaatttgaagccagtattgaagaataacatccagtttcactagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 actgactaactcagttgaatttgaagccagtattgaagaataacatccagtttcactagt 474

                                                                       
Query: 61  agatcttgagactgtccattttccatttccaaagtaccagccacccaaagagatagcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agatcttgagactgtccattttccatttccaaagtaccagccacccaaagagatagcaca 414

                                                                       
Query: 121 gcttggaatgtcaagggatcccttttaatctgcatgtctttagttttggaatgacttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcttggaatgtcaagggatcccttttaatctgcatgtctttagttttggaatgacttttg 354

                                                                       
Query: 181 ttagtgatgaccaccaacttgtgtcttcccagatggaaaggaaagtgtttggcaaagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttagtgatgaccaccaacttgtgtcttcccagatggaaaggaaagtgtttggcaaagtct 294

                                                                       
Query: 241 ttgaaaatagcagctcatgttaccactactgtctgtgtttgatggcagtgatggctataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttgaaaatagcagctcatgttaccactactgtctgtgtttgatggcagtgatggctataa 234

                                            
Query: 301 tcaactcctctaggctagtggagtttttgttgt 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tcaactcctctaggctagtggagtttttgttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)