BAC Information

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BAC

Clone NameMSMg01-153J17
Chromosome1 (Build37)
Map Location 4,855,452 - 4,855,986
singlet/doubletsinglet
Overlap geneTcea1
Upstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1
Downstream geneLOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153J17.T7 (MSMg01no153_j17.b1)MSMg01-153J17.TJ (MSMg01no153_j17.g1)
ACCAG355154AG355155
length721725
length of high quality
(start - end)
537 (69 - 605)588 (74 - 661)
definitionCHROMAT_FILE: MSMg01no153_j17.b1 PHD_FILE: MSMg01no153_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:01 2005CHROMAT_FILE: MSMg01no153_j17.g1 PHD_FILE: MSMg01no153_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAA
TTCTTCAGATTTCCTCGTTTAACAGTATCTCACTACATAGCCCTAACTGG
CCTGGAATTCTCTAAATAGGCCAAGCTGACCTCTAACTCTTAGAAATGCA
TCTGTCTTAGCATCCTGAGGTTTGGAATTAAAAGCATATACTGTCATGCA
TGGTTAAAATACTTTTTGTCAATAAGGAGAAGGAAAGGAATTATAAGAAA
ATGTACTATGACTTAAAAATTATTTTTGAGCAGAGGGACAAGGAGTAAAG
CATGACAATAACCCCAACCCCCTATCCTCATATAAAGAAGACTGGAAGTG
GATATGGTAGCAGTCTTGTAACCCCAGTGCAGAAGGTACAGACAGGGAAT
CCCTGGAGCCAGAGGCCTTGCCTGAGTATGAGAAGGGACTGCCGGAATAT
ACCTGATGTTAGCCCAAGACTTCTCAGGGCTCTCTGACACACAAGAAAAT
CAACACACATAGTAAACCAAAATGAAGCATTTAATCACTCCCCCCCCCCC
TTTTTTCTGTTAAAATGTAGAGCATCAATGAGATGATTAAGTGACCATTT
TAGGTGAAGCGAAATTAAGTAAATATACCATTGTGGCGTCTCACACCTTT
AATTCCCTTACTTAGAGGGTATGTAGAGGCAGGTGGATCTCTTTCAGTTT
TAGGCCATCCTGATCTACGTA
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACAGAATGGCTGAG
GAGCACCTGAAAAAAATGTTCAGCATCCTTAAGCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCCCACACCAGTCAGAATGGCCAAGATC
AAAAATTCAGTTGACAGCAGATTTTGGGGAGGATGTGGAGAAAGAGAAAC
ACTCCTCCATTGTTGGTGGGATTGCAAGCTCTTACAACCACTCTGGAAAT
CAGTCTGGTGGTTCCTCAAAAAATTAGACTTAGTACTACCAGAGGATCCT
GCAATACCTCTCCTGACATATATCCAGAAGATGTTCCAACTGGTAAGAAG
GACGCATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGTAACCTGATGTCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAGGACTACTCAGCTTCTAAAAACAATGAATTT
ATGAAGTTCCTAGGCAAATGGATGGACCTGGAGGGTATCATTCTGATTGA
GGTAACCATTCACAAAACAACTCACATGATATGTACTCACTGCTAAGTGG
ATATTATCCCAGAAACTTAGAATACCCATGATATAAGATACAGTTTGCAA
AACACATGACACTCAAGAAGAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_j17.b1 MSMg01no153_j17.b1 CHROMAT_FILE:
MSMg01no153_j17.b1 PHD_FILE: MSMg01no153_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:01 2005
         (537 letters)



>mm_chr1_4855253_4856186
          Length = 934

 Score =  917 bits (474), Expect = 0.0
 Identities = 521/538 (96%), Gaps = 4/538 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaacagtatctcactacatagccctaactggcctggaattctctaaataggccaagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 200 ttaacagtatctcactacatagccctaactggcctggaattctctaagtaggccaagctg 259

                                                                       
Query: 61  acctctaactcttagaaatgcatctgtcttagcatcctgaggtttggaattaaaagcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acctctaactcttagaaatgcatctgtcttagcatcctgaggtttggaattaaaagcata 319

                                                                       
Query: 121 tactgtcatgcatggttaaaatactttttgtcaataaggagaaggaaaggaattataaga 180
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 320 tactatcatgcatggttaaaatactttttgtcaataagcagaaggaaaggaattataaga 379

                                                                       
Query: 181 aaatgtactatgacttaaaaattatttttgagcagagggacaaggagtaaagcatgacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaatgtactatgacttaaaaattatttttgagcagagggacaaggagtaaagcatgacaa 439

                                                                       
Query: 241 -taaccccaaccccctatcctcatataaagaagactggaagtggatatggtagcagtctt 299
            || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atagccccaacccccaatcctcatataaagaagactggaagtggatatggtagcagtctt 499

                                                                       
Query: 300 gtaaccccagtgcagaaggtacagacagggaatccctggagccagaggccttgcctgagt 359
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 gtaaccccagtgcagaaggtacagacagggaatccctggagcaagaggccttgcctgagt 559

                                                                       
Query: 360 atgagaagggactgccggaatatacctgatgttagcccaagacttctcagggctctctga 419
           |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 atgagaagcgtctgccggaatatacctgatgttagcccaagacatctcagggctctctga 619

                                                                       
Query: 420 cacacaagaaaatcaacacacatagtaaaccaaaatgaagcatttaatcactcccccccc 479
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct: 620 cacacaagaaaatccacacacataataaaccaaaatgaagcatttaatcactccccccct 679

                                                                     
Query: 480 cccttttttctgttaaaatgtagagcatcaatgagatgattaagtgaccattttaggt 537
              ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 680 ---ttttttctgttaaaatgtagagcatcagtgagatgattaagtgaccattttaggt 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 934
Length adjustment: 10
Effective length of query: 527
Effective length of database: 924
Effective search space:   486948
Effective search space used:   486948
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)