CAAAATTTGCGGCGCTAAACGACTCCTATATCGAGAGATCCGCGGAATTC
CTGCTGGTACGGAGCACGAGCTTGGGTGGTACAGTCCTTGCCTACCGTGT
GCAAAACTGTGGGGTCAATAACTGGCAGCATATAAAAACAGACAGGGTAG
GACAAGTCTGTAATCTCAGCAGGCTGATGATTGGGGGTTCAAGGTCATCC
TCAGCTGCACGATAAGTTCAAGGCCAACCTGGGCTACCTGAACCCCTGTC
TCAAATAAATAAAATGAAACAACAAAAAAAGGGATGTAGGATGGCTCAGT
AGGTGGAGGCACTGGCTGCCATGCCTGACAGCCAGGCCCACTTGGTAAAA
GGAAAGGACTGATTCGCAAACACTATAGCACAGATAGATAAATATAAGAA
TTACTTTCTTAAAAATTTTAAAGAAATCCCAAGAATGTGACCCTAGGAAA
CTATAAGGATTTATTTATCCAGCTAGCTAGCCTTCTGTTTATCAAGTATA
TGAATACTTTTGACTATTTTTTTTTATTTTGATTTGACTTGGTTCAGTTT
GTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCACGTGGTAGACCAG
GCTGGCCTCGAACTCAGAGACCTGCATGTCTCTGCCTCTGCCAAGTGCTG
GGATTAAAAATGTATACTACCAGTGCCCGGCACTTTTGACTATTTTGGAA

ATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTTGAACTCA
GAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCC
ACCAAGCCCGGCTCAAGTTTTTAAAGGAAACTCCATGCTTCTTTCTATAT
TCTCACACATTTTACAATGCTACTAACAATGGACCAATGCTCCATTTTCT
CTAAAACTTTGCCAACATGTTGTCTTCTATTTGGTTGGTTGGTTTTGGTA
GTAGTCAACCTGATGGATATAATGTGATATCTTTGTGTCTAGTCACTCTC
CAATAACACAAAGTCTTTTGGTCATTTTCACCTCTAAAGAACAATCTCAG
GGGGTGGCACATGTTCCCCTGAGCTACATTGTCTAGCTCTGGACTCACTC
TTCGGTCCAGAGGAGTCTTGTGGGAAACCAAGAGAATCCTACTTCCCCGT
GGAAACCTTCAAGAACCCCAAAACTTGGAACCCTGCCCAACCAATCCCAT
TCCAGTAAGAGTTGCCCACTATCCCAATTGATCCATCTGGGACAGCCTAC
AGAGGTGAGTTGTGCGCAGCTATCCTTCTACAACAAACCCTGGATATCCT
AATGAAACTGAAGTACAAGAAGAGGATTTTAAATTCAATCTAATGAAGC

Query= MSMg01no153_o01.b1 MSMg01no153_o01.b1 CHROMAT_FILE:
MSMg01no153_o01.b1 PHD_FILE: MSMg01no153_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:21 2005
         (661 letters)



>mm_chr1_85303799_85304864
          Length = 1066

 Score = 1139 bits (589), Expect = 0.0
 Identities = 645/671 (96%), Gaps = 18/671 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcctgctggtacgg-agcacgagcttgggtggtacagtccttgcctaccgtgtgca 64
           ||||||||||||| | || ||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 205 gaattcctgctgggaaggcagcacgagcttgggtagtacagtgcttgcctaccgtgtgca 264

                                                                       
Query: 65  aaactgtggggtcaataactggcagcatataaaaacagacagggtaggacaagtctgtaa 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattgtggggtcaataactggcagcatataaaaacagacagggtaggacaagtctgtaa 324

                                                                       
Query: 125 tctcagcaggctgatgattgggggttcaaggtcatcctcagctgcacgataagttcaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcagcaggctgatgattgggggttcaaggtcatcctcagctgcacgataagttcaagg 384

                                                                       
Query: 185 ccaacctgggctacctgaacccctgtctcaaataaataaaatgaaacaacaaaaaaaggg 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaacgtgggctacctgaacccctgtctcaaataaataaaatgaaacaacaaaaaaaggg 444

                                                                       
Query: 245 atgtaggatggctcagtaggtggaggcactggctgccatgcctgacagccaggcccactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 atgtaggatggctcagtaggtggaggcactggctgccatgcctgacagccaggcccactc 504

                                                                       
Query: 305 ggtaaaaggaaaggactgattcgcaaacactatagcacaga----tagataaatataaga 360
           |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 505 ggtaaaaggaaaggactgattcgcaaacactatagcacagacagatagataaatataaga 564

                                                                       
Query: 361 attactttcttaaaaattttaaagaaatcccaagaatgtgaccctaggaaactataagga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 attactttcttaaaaattttaaagaaatcccaagaatgtgaccctaggaaacgataagga 624

                                                                       
Query: 421 tttatttatccagctagctagccttctgtttatcaagtatatgaatacttttgactattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttatttatccagctagctagccttctgtttatcaagtatatgaatacttttgactattt 684

                                                                       
Query: 481 tttttt-attttgatttga-cttggttcagtttgtcaagacagggtttctctgtgtagcc 538
           |||||| |||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 tttttttattttgattt-agcttggttcagttt-tcaagacagggtttctctgtgtagcc 742

                                                                       
Query: 539 ctggctgtc---------acgtggtagaccaggctggcctcgaactcagagacctgcatg 589
           |||||||||         ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctggctgtcctggacctcacgtggtagaccaggctggcctcgaactcagagacctgcatg 802

                                                                       
Query: 590 tctctgcctctgccaagtgctgggattaaaaatgtatactaccagtgcccggcacttttg 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tctctgcctctgccaagtgctgggattaaaaatgtatactaccagtgcccggcacttttg 862

                      
Query: 650 actattttgga 660
           |||||||||||
Sbjct: 863 actattttgga 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1066
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1056
Effective search space:   687456
Effective search space used:   687456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)