Query= MSMg01no154_b20.b1 MSMg01no154_b20.b1 CHROMAT_FILE:
MSMg01no154_b20.b1 PHD_FILE: MSMg01no154_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:39 2005
(530 letters)
>mm_chr1_24537603_24538533
Length = 931
Score = 996 bits (515), Expect = 0.0
Identities = 524/527 (99%), Gaps = 1/527 (0%)
Strand = Plus / Plus
Query: 5 gaattcagggctgccct-aacaaagaagtatatattagacttggtgtatagcatgatcag 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagggctgcaattaacaaagaagtatatattagacttggtgtatagcatgatcag 264
Query: 64 attcatctctcttcccactttcttccctcctttctcctgaccctttctctgcggttcttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcatctctcttcccactttcttccctcctttctcctgaccctttctctgcggttcttt 324
Query: 124 attgacaatttaatagatcttggttttgcattactttgatgttaatagatatgtatttta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attgacaatttaatagatcttggttttgcattactttgatgttaatagatatgtatttta 384
Query: 184 tatagaaaaagcaaattatggtgttgtaagagttcatctgtggttatagaaaacagacat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatagaaaaagcaaattatggtgttgtaagagttcatctgtggttatagaaaacagacat 444
Query: 244 ctggctagctgtgaatctctaacttgcccccatgctacacacaccatgaaatccaggagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctggctagctgtgaatctctaacttgcccccatgctacacacaccatgaaatccaggagg 504
Query: 304 tattctctaatgtgcactatactgagagtgacaaaataaatttggctcatcagacattct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattctctaatgtgcactatactgagagtgacaaaataaatttggctcatcagacattct 564
Query: 364 agaaaacttacggaattattatcagcctcacatctatgggtaagacaaaaatcttcaaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaaacttacggaattattatcagcctcacatctatgggtaagacaaaaatcttcaaga 624
Query: 424 ttcggtgatatataacttataggaattttacaaggtcattgagatgaattttcatttgaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcggtgatatataacttataggaattttacaaggtcattgagatgaattttcatttgaa 684
Query: 484 gagcttaagtacaatacttagcctaataaaatactagagagaggata 530
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagcttaagtacaatacttagcctaataaaatactagagagaggata 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space: 478920
Effective search space used: 478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_b20.g1 MSMg01no154_b20.g1 CHROMAT_FILE:
MSMg01no154_b20.g1 PHD_FILE: MSMg01no154_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:39 2005
(220 letters)
>mm_chr1_24686294_24686914
Length = 621
Score = 352 bits (182), Expect = e-102
Identities = 191/194 (98%), Gaps = 1/194 (0%)
Strand = Plus / Minus
Query: 1 tctcctagtacagggctagatagcctccctccaggacacaagctaagcatggcccagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tctcctagtacagggctagatagcctccctccaggacacaagctaagcatggcccagggc 280
Query: 61 aatgggatttgttaaagtgaagggagcatgccagtactaagactgaa-ttagggttcctg 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 279 aatgggatttgttaaagtgaagggagcatgccagtactaagactgaatttagggttcctg 220
Query: 120 aacatgcaaggcaagtgtcctgtgcgtgtgtgtgtctgtgtgtgtgtctgtacctctgtg 179
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 219 aacatgcaaggcaagtgtcgtgtgcgtgtgtgtgtctgtgtgtgtgtctgtatctctgtg 160
Query: 180 tgtgtgtgtgtgtg 193
||||||||||||||
Sbjct: 159 tgtgtgtgtgtgtg 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 621
Length adjustment: 9
Effective length of query: 211
Effective length of database: 612
Effective search space: 129132
Effective search space used: 129132
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
