BAC Information

Click to search

BAC

Clone NameMSMg01-154C14
Chromosome1 (Build37)
Map Location 63,852,179 - 63,852,669
singlet/doubletsinglet
Overlap genenone
Upstream geneNrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik
Downstream geneLOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154C14.T7 (MSMg01no154_c14.b1)MSMg01-154C14.TJ (MSMg01no154_c14.g1)
ACCAG355534AG355535
length686686
length of high quality
(start - end)		552 (41 - 592)489 (72 - 560)
definitionCHROMAT_FILE: MSMg01no154_c14.b1 PHD_FILE: MSMg01no154_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:43 2005CHROMAT_FILE: MSMg01no154_c14.g1 PHD_FILE: MSMg01no154_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATT
CCCAGAGGCCGCAGAGCTTCCTCTCAACAAGGTGAATGCCATTGGTCTTG
ATTAGTAGAAGCTAAGTCCCTATTGCTCAAACCATCTCACACTTGGTTTT
TGGAAACAAAGAGGTCTGGCTGGAACTGAACTGAAAGGCTCTGTTCTCCA
GGCTAGTTTTCCTTGTGCGAGAACTCTGTCAACCTCTAGGGAAAAGTCAC
CAACAGGCTTACCCAGCTGTGATCCCTGCAAATACAAAATCTACCTTCCA
AGCAAAAGCACCCACTGGTGTAATAGTAGTGTGACCATCATGAGGTTTAA
CAACCACTATATGATTGGATTTGAGGCTCGCTCCATGGGAGGAAACTCAT
GCTTCATACTGTAGACCTGGTCAAGAGCCTGTGACTTCAGGGATTGTTTA
CCTTATGGTCCATGGACCAGTAACATTGGTCTTAGATGATAGTGTGCTGA
ATTGTTCATTTGCTAATGGTACTGTGTTTGTATCCATAGATTAGTGCTGT
TCTTGGTGTTGTTCAGAGTCTTTTTTTTTTTTTTTTTTTTTACAGGCATT
GGTTAATGCAAACACTGATTAAGTGGTCAGGGTACAGAGAATAAGTCACT
ACTGAATGCTCAGCTCTAAGTGATAAATCTTGTATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGATGACATAATTATGTGCTTCAGATAG
GACAGGACAGTAAAAGACAGTAGTAGATACCATAATAGAAATATGTAATT
TAAAAAAAGCCAGTGAAGGAATGTGCTTCACACATAACAAGAAAAGCTCC
CCGGCGAGCTATAATTTGAATAGAACATCAAAAGGCAAGTGAACACTCCA
TGTGTGTGATTCTGTAGTTCTTGAGTTTGTATATTTATCTATTCAGGCTG
GTCTAACATAATAGGTAAAATTTTACTCTTCTATTCTGTATTTTACCTGT
TTCTCATAGTTAATTTTTGTGTGTTTATGTGTGTGCATGTAAATGAGAAC
ACAAGTATATGCATGTCCACTTATGGGTTTGTGTGTGTGTAAGCTCAAAG
TTGACATGAGATAGCTTCTTCAATTACTCTTCACTTTATTTATTTAGTTA
GAGTCTTTTGCTGAATCTAGAGCCTAGTCAGCAAACCCTGACCGGCTCAT
AGTGGCCGGCACAAGTGCAACAGTAGCTTCCAGACCTGCCAACCCCTTAA
GCCTGACTGACACCTGGAGGCCCATGATGACAGACAGTTGACCAGAACCG
CCATTCAGATGGTGCCTGCTACCTAAAGCAAGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_c14.g1 MSMg01no154_c14.g1 CHROMAT_FILE:
MSMg01no154_c14.g1 PHD_FILE: MSMg01no154_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:43 2005
         (489 letters)



>mm_chr1_63851979_63852869
          Length = 891

 Score =  911 bits (471), Expect = 0.0
 Identities = 486/491 (98%), Gaps = 2/491 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatg-acataattatgtgcttcagataggacaggacagtaaaagacagtagtagatac 59
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatgtacataattatgtgcttcagataggacaggacagtaaaagacagtagtagatac 260

                                                                       
Query: 60  cataatagaaatatgtaattt-aaaaaaagccagtgaaggaatgtgcttcacacataaca 118
           | ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtaatagaaatacgtaatttaaaaaaaagccagtgaaggaatgtgcttcacacataaca 320

                                                                       
Query: 119 agaaaagctccccggcgagctataatttgaatagaacatcaaaaggcaagtgaacactcc 178
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaagctccccggagagctataatttgaatagaacatcaaaaggcaagtgaacactcc 380

                                                                       
Query: 179 atgtgtgtgattctgtagttcttgagtttgtatatttatctattcaggctggtctaacat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtgtgtgattctgtagttcttgagtttgtatatttatctattcaggctggtctaacat 440

                                                                       
Query: 239 aataggtaaaattttactcttctattctgtattttacctgtttctcatagttaatttttg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataggtaaaattttactcttctattctgtattttacctgtttctcatagttaatttttg 500

                                                                       
Query: 299 tgtgtttatgtgtgtgcatgtaaatgagaacacaagtatatgcatgtccacttatgggtt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtttatgtgtgtgcatgtaaatgagaacacaagtatatgcatgtccacttatgggtt 560

                                                                       
Query: 359 tgtgtgtgtgtaagctcaaagttgacatgagatagcttcttcaattactcttcactttat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgtgtgtgtaagctcaaagttgacatgagatagcttcttcaattactcttcactttat 620

                                                                       
Query: 419 ttatttagttagagtcttttgctgaatctagagcctagtcagcaaaccctgaccggctca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatttagttagagtcttttgctgaatctagagcctagtcagcaaaccctgaccggctca 680

                      
Query: 479 tagtggccggc 489
           |||||||||||
Sbjct: 681 tagtggccggc 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 891
Length adjustment: 10
Effective length of query: 479
Effective length of database: 881
Effective search space:   421999
Effective search space used:   421999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |