Query= MSMg01no154_e08.b1 MSMg01no154_e08.b1 CHROMAT_FILE:
MSMg01no154_e08.b1 PHD_FILE: MSMg01no154_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:51 2005
(495 letters)
>mm_chr1_109395806_109396701
Length = 896
Score = 911 bits (471), Expect = 0.0
Identities = 486/491 (98%), Gaps = 1/491 (0%)
Strand = Plus / Minus
Query: 6 aattctttggaaag-actcaactaaaccttcagggaagataatgtaaaatgaaaataaag 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aattctttggaaagtattcaactaaaccttcagggaagataatgtaaaatgaaaataaag 637
Query: 65 ttgtaaacagttctgaagaaatcaaaaccttttacagtgaaaaagttgtttgtatattag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ttgtaaacagttctgaagaaatcaaaaccttttacagtgaaaaagttgtttgtatattag 577
Query: 125 gaaaagacagtaatctttgtttagacaagattaggaaataattttgtaacatgccattct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaaaagacagtaatctttgtttagacaagattaggaaataattttgtaacatgccattct 517
Query: 185 gttgtgatcctagagtaactgtgttacattatgttttctgtgacttgttttatatacaga 244
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 516 gttgtggtcctagagtaactgtgttacattatgttttctgtgtcttgttttatatacaga 457
Query: 245 aggagcagagcattgcttagatttgaagacagctcagtttcaaaatgtcaaggcagctac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aggagcagagcattgcttagatttgaagacagctcagtttcaaaatgtcaaggcagctac 397
Query: 305 tctctgctcatgtccattctgataggcaagcagtgactctttctgaaatggcaaactcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tctctgctcatgtccattctgataggcaagcagtgactctttctgaaatggcaaactcaa 337
Query: 365 catgcattcaaagattaaataacccgatgaagagtatcaaaagatcgtgctgattctcac 424
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 336 catgcattcaaagattaaataacctgatgaagagtatcaaaagatcgtgctgattctcac 277
Query: 425 cagctcactcattataataaatttattttctaccatccaaaagttattactgtattgtct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cagctcactcattataataaatttattttctaccatccaaaagttattactgtattgtct 217
Query: 485 cccatttctct 495
|||||||||||
Sbjct: 216 cccatttctct 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space: 429710
Effective search space used: 429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_e08.g1 MSMg01no154_e08.g1 CHROMAT_FILE:
MSMg01no154_e08.g1 PHD_FILE: MSMg01no154_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:51 2005
(345 letters)
>mm_chr1_109270253_109270997
Length = 745
Score = 667 bits (345), Expect = 0.0
Identities = 345/345 (100%)
Strand = Plus / Plus
Query: 1 acctgtctctgctttccatctcttgtaggagaactgaggttacaagtgcatactgacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctgtctctgctttccatctcttgtaggagaactgaggttacaagtgcatactgacaca 260
Query: 61 cctgacttttgcatggttctggctatgcgaactcagcccctcacacttgcataggaagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgacttttgcatggttctggctatgcgaactcagcccctcacacttgcataggaagtc 320
Query: 121 atttactcactgggccatattcccagacccgtccttgcactatttttctgctgcctctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttactcactgggccatattcccagacccgtccttgcactatttttctgctgcctctca 380
Query: 181 attgtcccttcttttccagcaatatgtaagatgttgtgagaaactgtaccaagccaagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtcccttcttttccagcaatatgtaagatgttgtgagaaactgtaccaagccaagct 440
Query: 241 gcaaactgttgattttgaactatctacagaagagacaaggaaaagtattaacgcttgggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaactgttgattttgaactatctacagaagagacaaggaaaagtattaacgcttgggt 500
Query: 301 taaaaataaaactaatggtaaggataattgtgtgtgtgtgtgtgt 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaaataaaactaatggtaaggataattgtgtgtgtgtgtgtgt 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
