CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CATGTGTATCACGGTCCTGTCATGTCCATAAATACTGTTTTGCTGCAATA
TCTGCTCCCTCTGACTCTCACATTCCTTCTGAGCACTCTTCCATATTGAC
CCATGGACCTTGATCCAGCATGTAATATAGATATTCTAGCAGTCAGAAAA
GAGAGTGTAGAGTATCATGTCTATGGAGCTGTTAAAGACCCACTTTCTGC
AAACCTGAGCACAAAAGAAAAAGCTAGAAAAATTACAATACCTACAATCA
AATCACACCAGTCATAACAACAAATGCATGTGATTCTTACTAAAAGTGAC
ACTCTGTAAATAGAAAAGAATGGGAAACCAAGGAATAGATATATATACCA
ATGACCAGTTAATTCCATCAGTGATACCAATAATAATAATAATAAAATCA
CACATTTTAAGTGAAATTCCAGCTCTTCAATAAATACTTCTGTGTAAACT
GGAGAGCCAAGATGCAAAAAATGAAACTAGATCTGTATCTCTGACCAGTC
ACAAAAACAAGTAAACAAGCAAGCAAGCAAACAAACAAACAAAAAAATCA
CACACAACATAGATCTCAGACCTAACTGGGAAGCTATTAGGAGAGAACAC
ATGAAAAGCTCTTCAAGACATTGGCAGAGNTAAACAAGTAGGGCAGA

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTGTCATGT
TGGATTTTGTCAAATGCATTCTGAGCATCTAATGAGATGATCATGTATCT
TTTTTCTTTGAGTCTGTTTATGTAGGGGATTATATTGATGTATTCATGTG
TGTTAAACCATCCCTGCATCCCTGAGATGAAGCCTACTTGATAGTGATGT
ATGAGCCATTTGATGTGTTTTCAATTCAGTTGGCAAGAATTTTATAGATT
ATTTTAGAATTGCTATTCCAAAGGGAAATTGGTCTCATTTCTCTTTCTTT
GTTAGGTCTATTTTCTTTTGTTATCAGAGCAATTGTGGCTTCATTGAACA
AATTAGGTAGGGTTTCTTATGTTCTATTTTGTGCAATAGTTTGAAGAGTA
CTGGTATTAGGACCTTTTTGAAGGTCTGATAGAATTCTGCACTAAACCCA
TCTGGTCCTGGTCTTTTTGTGGTTGGGAGCCATTTAGTGACTGCTTCTGT
TTCTTTATGATTTTTGTGATTGTTTAGATGGTTTTTCTGATCCTGCTTTA
GCTTTGGTATTTGGTATCTGTTGAGTTGTGTTGAGTAGAGGTTTTGGTAG
TAAGATCTGATGATTTTGTGAATTGACCCCGTTTCCGGTGTTATTTT

Query= MSMg01no154_g17.b1 MSMg01no154_g17.b1 CHROMAT_FILE:
MSMg01no154_g17.b1 PHD_FILE: MSMg01no154_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:03 2005
         (629 letters)



>mm_chr1_31165833_31166861
          Length = 1029

 Score = 1166 bits (603), Expect = 0.0
 Identities = 621/627 (99%), Gaps = 3/627 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcatgtgtatcacggtcctgtcatgtcc-ataaatactgttttgctgc-aatatct 63
           |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 748 gaattcatgtgtatcatggtcctgtcatgtccaataaatactgttttgctgcaaatatct 689

                                                                       
Query: 64  gctccctctgactctcacattccttctgagcactcttccatattgacccatggaccttga 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 688 gctccctctgactctcacattcctcctgagcactcttccatattgacccatggaccttga 629

                                                                       
Query: 124 tccagcatgtaatatagatattctagcagtcagaaaagagagtgtagagtatcatgtcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tccagcatgtaatatagatattctagcagtcagaaaagagagtgtagagtatcatgtcta 569

                                                                       
Query: 184 tggagctgttaaagacccactttctgcaaacctgagcacaaaagaaaaagctagaaaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggagctgttaaagacccactttctgcaaacctgagcacaaaagaaaaagctagaaaaat 509

                                                                       
Query: 244 tacaatacctacaatcaaatcacaccagtcataacaacaaatgcatgtgattcttactaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tacaatacctacaatcaaatcacaccagtcataacaacaaatgcatgtgattcttactaa 449

                                                                       
Query: 304 aagtgacactctgtaaatagaaaagaatgggaaaccaaggaatagatatatataccaatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagtgacactctgtaaatagaaaagaatgggaaaccaaggaatagatatatataccaatg 389

                                                                       
Query: 364 accagttaattccatcagtgataccaataataataataataaaatcacacattttaagtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 accagttaattccatcagtgataccaataataataataataaaatcacacattttaagtg 329

                                                                       
Query: 424 aaattccagctcttcaataaatacttctgtgtaaactggagagccaagatgcaaaaaatg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaattccagctcttcaataaatacttctgtgtaaactggagagccaagatgcaaaaaatg 269

                                                                       
Query: 484 aaactagatctgtatctctgaccagtcacaaaaacaagtaaacaagcaagcaagcaaaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaactagatctgtatctctgaccagtcacaaaaacaagtaaacaagcaagcaagcaaaca 209

                                                                       
Query: 544 aacaaac-aaaaaaatcacacacaacatagatctcagacctaactgggaagctattagga 602
           ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 208 aacaaacaaaaaaaatcacacacaacatagatctcagaccgaactgggaagctattagga 149

                                      
Query: 603 gagaacacatgaaaagctcttcaagac 629
           |||||||||||||||||||||||||||
Sbjct: 148 gagaacacatgaaaagctcttcaagac 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)