Query= MSMg01no154_k17.b1 MSMg01no154_k17.b1 CHROMAT_FILE:
MSMg01no154_k17.b1 PHD_FILE: MSMg01no154_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:22 2005
(533 letters)
>mm_chr1_160975213_160976145
Length = 933
Score = 955 bits (494), Expect = 0.0
Identities = 524/534 (98%), Gaps = 2/534 (0%)
Strand = Plus / Minus
Query: 1 aggctggtctcctggtggtgggtagcaaaatgagggagcttgaggggcctggtaggcaag 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 733 aggctggtctcctggtggtgggtagcaaagtgagggagcttgaggggcctggtaggcaag 674
Query: 61 gggacattgtgtagctat-ggacctgtctgctaagatgggtctgcctctgaggacacacc 119
|||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 673 gggacattgtgtagct-tcggacctgtctgctaagatgggtcggcctctgagttcacacc 615
Query: 120 atcctgccctctttgcacacgtgtgaggaacacccagattcaacagagaatggatgaagg 179
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atcctgctctctttgcacacttgtgaggaacacccagattcaacagagaatggatgaagg 555
Query: 180 aaaatattttttctcaagtagtaatttcctttcatgacactggttagggccaccccttct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaaatattttttctcaagtagtaatttcctttcatgacactggttagggccaccccttct 495
Query: 240 ccctcttcccaccccccactcaggctcttgccaggaaggaaaatcctatgtacacacctg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ccctcttcccaccccccactcaggctcttgccaggaaggaaaatcctatgtacacacctg 435
Query: 300 gaattgtagaccagacgaaaacatcaagacagtcactcgatggggaacagattctcagcc 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaattgtagaccagacgaaagcatcaagacagtcactcgatggggaacagattctcagcc 375
Query: 360 ttacccgagcagctgccccacacaggctgtacctgtgactgtctgggagagtccccctgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttacccgagcagctgccccacacaggctgtacctgtgactgtctgggagagtccccctgt 315
Query: 420 ttgtgccccatcgcacctcatactaccttcttcttgtcacatcaccttgcccttggcaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttgtgccccatcgcacctcatactaccttcttcttgtcacatcaccttgcccttggcaca 255
Query: 480 tctaccacctccaaccctgttaatagagcaggattatgaaaagggtggagagtt 533
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 254 tctaccacctccaaccctgttaatagagcaagattatgaaaagggtggagagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_k17.g1 MSMg01no154_k17.g1 CHROMAT_FILE:
MSMg01no154_k17.g1 PHD_FILE: MSMg01no154_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:22 2005
(561 letters)
>mm_chr1_160844624_160845585
Length = 962
Score = 1033 bits (534), Expect = 0.0
Identities = 555/562 (98%), Gaps = 1/562 (0%)
Strand = Plus / Plus
Query: 1 agtgctaagatctttagtttggaaacagagacccaggtctagtcatatcttgggggg-ag 59
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct: 201 agtgctaagatctttagtttgggaacagagacccaggtctagtcatattttgggggggag 260
Query: 60 gaaggggcaattcattgaatttttctgttttggactgaaagcagaaatctctcctttccc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggggcaattcattgaatttttctgttttggactgaaagcagaaatctctcctttccc 320
Query: 120 atccaggtctcagattctaatttataagactatgctcttagtctacgtgttaaggtacga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccaggtctcagattctaatttataagactatgctcttagtctacgtgttaaggtacga 380
Query: 180 taacaagttgacaggtgccttagtcagggtttctattcctgcacaaacatcatgaccaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacaagttgacaggtgccttagtcagggtttctattcctgcacaaacatcatgaccaag 440
Query: 240 aagcaagttggtgagaaaagggtttattcggcttacacttccatactgctgttcatcacc 299
||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcaagctggggaaaaaagggtttattcggcttacacttccatactgctgttcatcacc 500
Query: 300 aaggaagtcaggactggaactcaagcaggtcagaaagcaggagccgatgcagaggccatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggaagtcaggactggaactcaagcaggtcagaaagcaggagccgatgcagaggccatg 560
Query: 360 gagggatgttctttactggcttgcctcccctggcttgctcagcctgctctcttatagaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagggatgttctttactggcttgcctcccctggcttgctcagcctgctctcttatagaac 620
Query: 420 ccaagactatcagcccagagatggtcccacccacaaggggcctttcccccttgatcacta 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagactaccagcccagagatggtcccacccacaaggggcctttcccccttgatcacta 680
Query: 480 attgagaaaatgccttagagttggatctcatggaggcattccctcaactgaagctccttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgagaaaatgccttagagttggatctcatggaggcattccctcaactgaagctccttt 740
Query: 540 ctctgtgataaccccagctgtg 561
||||||||||||||||||||||
Sbjct: 741 ctctgtgataaccccagctgtg 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space: 524552
Effective search space used: 524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
