Query= MSMg01no154_o19.b1 MSMg01no154_o19.b1 CHROMAT_FILE:
MSMg01no154_o19.b1 PHD_FILE: MSMg01no154_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:41 2005
(610 letters)
>mm_chr1_14313550_14314560
Length = 1011
Score = 1073 bits (555), Expect = 0.0
Identities = 597/611 (97%), Gaps = 1/611 (0%)
Strand = Plus / Plus
Query: 1 tgactcacttaaactcaggagttacactaactcagtaagtaaaatttattgcctgtgaaa 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tgactcacttaaactcaggagttacactaactcattaagtaaaatttattgcctgtgaaa 260
Query: 61 aatagccatatttacaataaaatacactccacagattgatgtataagctttgcggctaac 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagccgtatttacaataaaatacactccacagattgatgtataagctttgcggctaac 320
Query: 121 aactatttaccaaagcacatgtgaatgtggggacttctttctctatatgggaggcttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactatttaccaaagcacatgtgaatgtggggacttctttctctatatgggaggcttctt 380
Query: 181 caggttgtgaaagactccct-ctggtacagtcaagagaaggcaaccaagagcccctgagt 239
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 caggttgtgaaagactcccttctggtacagtcaagagaaggcaaccaagagcccctcagt 440
Query: 240 ccccagtgagagcacaaaaatgcttagaaattaggtgttgcagtctctgataaggacaaa 299
|||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct: 441 ccccagtgagagcacaaaaatgcttagaaattagttgttgcagcctctgatgaggacaaa 500
Query: 300 acaccatcagtgaatcactagaacctggacgccgtggcttcacagccagtatgatcctgg 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 501 acaccatcagtgaatcactagaacctggatgccgtggcttcacagccagtatgatgctgg 560
Query: 360 tcaaaggggagctgcaccgtttaagcttccccagcttgctcatcaagagcaagtaggaca 419
|||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaagaggagctgcactgtgtaagcttccccagcttgctcatcaagagcaagtaggaca 620
Query: 420 atggcaactttattgggtcaaggaaaatatctagtacctcccaagcaccccagatgtaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 atggcaactttattgggtcaaggaaaatatctagtacctcccaagcaccccagatataag 680
Query: 480 agtggtctagggaaaaggacctacaggaacaacctctgctgtcctgaggagaaagggaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtggtctagggaaaaggacctacaggaacaacctctgctgtcctgaggagaaagggaaa 740
Query: 540 gggcagtgttctagaacaatccagaaatgttagaatttaaatgcaaacaggacatgccct 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggacagtgttctagaacaatccagaaatgttagaatttaaatgcaaacaggacatgccct 800
Query: 600 cctgaagacat 610
|||||||||||
Sbjct: 801 cctgaagacat 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space: 600600
Effective search space used: 600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_o19.g1 MSMg01no154_o19.g1 CHROMAT_FILE:
MSMg01no154_o19.g1 PHD_FILE: MSMg01no154_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:41 2005
(595 letters)
>mm_chr1_14448739_14449734
Length = 996
Score = 1091 bits (564), Expect = 0.0
Identities = 588/596 (98%), Gaps = 1/596 (0%)
Strand = Plus / Minus
Query: 1 aagagctctgttgtggcctgaaagattctgagctgtacttagctacaaacttttccacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aagagctctgttgtggcctgaaagattctgagctgtacttagctacaaacttttccacag 737
Query: 61 cagtgactgagtactttcctaccattaagagactaacaggaaagaagttctcttagcatt 120
||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 736 cagtgactgagtattttcctgccattaagagaataacaggaaagaagttctcttagcatt 677
Query: 121 gagaagttggaagtcaggatttggagaaggcttgctcgggaatcatatgaccttgcatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gagaagttggaagtcaggatttggagaaggcttgctcgggaatcatatgaccttgcatcc 617
Query: 181 catttgggaatgtccactgagtagctgtgtgatcttgacatccagtcctttatctggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catttgggaatgtccactgagtagctgtgtgatcttgacatccagtcctttatctggttt 557
Query: 241 cacctgaggaacaaactaataaaatagagttgcaagaaacacacaaaacaatgaatgaca 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 556 cacctgaggaacaaactaataaaatagagttgcaagaaacacacaaaacagtgaatgaca 497
Query: 301 atcgtcagctattcagccaatgctagtatcttctcagctttgtccgactgcacactaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atcgtcagctattcagccaatgctagtatcttctcagctttgtccgactgcacactaaag 437
Query: 361 tgtgcacctcagagtcctcgcttgctttg-ttaagcaccagctgaggttgggtgctggtt 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 436 tgtgcacctcagagtcctcgcttgctttgcttaagcaccagctgaggttgggtgctggtt 377
Query: 420 cctatgctcagagctctggtccctttccagtttcagcctaattcttcctatttgtcttac 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 376 cctatgctcagagctctggtccctttgcagtttcagcctaattcttcctatttgtcttac 317
Query: 480 tacttgcttctgtgttttagtttgtttaagagactgtgctatttttatgaacatgggtca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tacttgcttctgtgttttagtttgtttaagagactgtgctatttttatgaacatgggtca 257
Query: 540 cctgaagtaaacttaaagagataaaataaactatttaaaaaagaaagaaaaagaaa 595
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 256 cctgaagtaaacttaaagagataaaataaactatttaaaaaggaaaaaaaaagaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 996
Length adjustment: 10
Effective length of query: 585
Effective length of database: 986
Effective search space: 576810
Effective search space used: 576810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
