BAC Information

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BAC

Clone NameMSMg01-155F24
Chromosome1 (Build37)
Map Location 63,993,972 - 63,994,363
singlet/doubletsinglet
Overlap genenone
Upstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842
Downstream geneOTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155F24.T7 (MSMg01no155_f24.b1)MSMg01-155F24.TJ (MSMg01no155_f24.g1)
ACCAG356400AG356401
length704714
length of high quality
(start - end)
394 (110 - 503)528 (77 - 604)
definitionCHROMAT_FILE: MSMg01no155_f24.b1 PHD_FILE: MSMg01no155_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:16 2005CHROMAT_FILE: MSMg01no155_f24.g1 PHD_FILE: MSMg01no155_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAT
TTGAAATAAATCCTTACCTTGAAGCAAGCATCTAAGTCAGAGAACAGGGC
TGTCCTGTCTGACTTGGGGCAGAAGCTGGATGGTGACTGTGGGGTAACCC
ACCTTCCTTCGTTTTTCTGCAAGCCTGGGGATTCACACTCCCTCCCTCAC
TGCGTGGTGTGTGGACAGATAGCACTGGTCTTAACTTATAGTGTGTTGGA
TTCTTAACTGTTTTAAAAAAGAAGAAAAGAAGATTCCTAGGTAATTTGGT
GATCTTGGCACCAAATTCTTTCTTCTATAGATAGCCCCAGTGGATTTCAG
AGTACATAAATAATCTGAAAAAAAAACTTGTTAAAACATAGATTCTTTGC
CACATCAATAGGTCAGTAGTGAAGTCTGGATTTTTGTGTGTTTGACAAGC
TCCTAAGGAAGCCTGATGGTGGTGGTTCCTAGACCCCTAGACATCAAGTA
GCAAGAAGCTAGATCAATGAATTTTCACATTAGCAGGCACCAGAATCATC
TGGAAGGTTTGTTCAACATACTATGCCCCATCTCAAAAGTTCTTAGGTCA
GGCTAATACAATTTCTCCCGGGAATGTGATGTCCGAGCTGGAGAAATGGG
TTCATAATTAGGATGAAACTGCCACCAGTTATGCCCCGGAACATTTATTA
TTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGCAGGCAAAAGAATCAGAG
ATACCCCGACTCCCACTGTTAGGAGTCCCATAGAAGCACCAAGCTAACAG
CCATAATTTATATGCAGAGGGCCTGATGCAGACCCATGCAGTCTCTGTAA
GTCCATATGAGCCCTCTTTAGTTGATTCAGTGGGCCATGTTCCTACTGAA
TCATGGAAAGTAAGACTTTGGGGTCTTCCATCCCCTCTGACCTTTGTAAT
TTTTCCTCCCCCCATTTCTCTGAGTTCCCCGAGCTTTGAGAGAATGGAGC
CCATGGAGACCTCTGATTTAGATTCTCTCCTCATAATTATTAGCTGTGTG
TCTCTGCATCCTCTCCAGCCTGCTGCTGGAGGAAGGTCTCTCATGAGGAC
AAGGCACCATCTGAGGATGGCCGACTACCATTCAGAATCACCTCATCCAT
TCTTTTATGTACTTGCTGAAGATCAGAACGCAGATCCTCATGTTTCCATG
GTAAACACTGACCTAGCAGCCATCTCAGCTGGCCCTCTGCAAGCTTATTT
GAGATCCCCATTTGACACCACAAGTAGACAGTTCCACACCTGACTGTTTA
CACAAAGAACAGTCAAAATGCAGGCAAATCAAAAAATATTATAAAATATT
GCTTTCAGGCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_f24.b1 MSMg01no155_f24.b1 CHROMAT_FILE:
MSMg01no155_f24.b1 PHD_FILE: MSMg01no155_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:16 2005
         (394 letters)



>mm_chr1_63993772_63994565
          Length = 794

 Score =  712 bits (368), Expect = 0.0
 Identities = 387/394 (98%), Gaps = 2/394 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacttggggcagaagctggatggtgactgtggggtaacccaccttccttcgtttttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tgacttggggcagaagctggatggtgactgtggggtaacccaccttccttcatttttctg 260

                                                                       
Query: 61  caagcctggggattcacactccctccctcactgcgtggtgtgtggacagatagcactggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcctggggattcacactccctccctcactgcgtggtgtgtggacagatagcactggt 320

                                                                       
Query: 121 cttaacttatagtgtgttggattcttaactgttttaaaaaagaagaaaagaagattccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaacttatagtgtgttggattcttaactgttttaaaaaagaagaaaagaagattccta 380

                                                                       
Query: 181 ggtaatttggtgatcttggcaccaaattctttcttctatagatagccccagtggatttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtaatttggtgatcttggcaccaaattctttcttctatagatagccccagtggatttca 440

                                                                       
Query: 241 gagtacataaataatctgaaaaaaaaacttgttaaaacatagattctttgccacatcaat 300
           || ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |
Sbjct: 441 gaatacataaataatctgaaaaaaa--cttgttaaaacatagattctttgccacatcagt 498

                                                                       
Query: 301 aggtcagtagtgaagtctggatttttgtgtgtttgacaagctcctaaggaagcctgatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aggtcagtagtgaagtctggatttttgtgtgtttgacaagctcctaaggaagcctgatgg 558

                                             
Query: 361 tggtggttcctagacccctagacatcaagtagca 394
           ||||||| ||||||| ||||||||||||||||||
Sbjct: 559 tggtggtccctagactcctagacatcaagtagca 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)