BAC Information

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BAC

Clone NameMSMg01-155K04
Chromosome1 (Build37)
Map Location 59,156,019 - 59,294,477
singlet/doubletdoublet
Overlap geneAls2cr4, Mpp4, Als2
Upstream geneAox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11
Downstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155K04.T7 (MSMg01no155_k04.b1)MSMg01-155K04.TJ (MSMg01no155_k04.g1)
ACCAG356591AG356592
length739734
length of high quality
(start - end)
364 (46 - 409)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no155_k04.b1 PHD_FILE: MSMg01no155_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:34 2005CHROMAT_FILE: MSMg01no155_k04.g1 PHD_FILE: MSMg01no155_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,294,118 - 59,294,477)(59,156,019 - 59,156,303)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCCTGTTGCCTTCATCTCACAAATGTTGGGATTACAGACGT
GTGCAGCCATGTTCTGATAGGTAAGATTTTCTCTTCATCTCTCGCAGTTT
GAGGAGGTAACAAAACTTGCAGTAGCTTCCATCCTCAAGCGCGGCCGATC
GTTACCATGGAAACGCTTATTGAGTTAGGTCCTTTCACTGAGTCTTCGGT
TGCTTCTAAAGTGCGCCCGCCCTAGGACGATTGGTTCTGCCCTGACTAAA
TGGTTTGCCTGCAGTCGCTGACGCGTTCGGAGCAATCTTGATCCCTGTCG
GACGCCGTCACCGGCTCTTGCCTAGCTCCACCCATTCTGCGGGTCCGCCT
CTCCAGCCCGTCGCCGGAGGCCCCGCCCCTACCTGGAGGCTCCGCCCCCA
TGAATTAGTTGATCTCGCGTACCCGCGCCGTAGCCGGTTTCGTTCCGGTA
GAAGAGTCGGATTTCGCTTGAGCGTCATGTGAGGTCGCGCGTTTTCGTGC
GGTCCTTGAGTGCGAATTGTTTCTCCGCTTACTTTCCCTACTGCCGCTTC
CCCGTTTTCGCTTTCCCCTTTTTTGCTCTGTTTCCACCCCTTGGACCCCC
GCCGTTTCTTTTTTATTTTCCCCCTTCCATGTTCCCCCCTTGTTTTTCCC
CGCTTTGCCTCCTCCCCTCACTTTTTTTGTACCTCCCTT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGAATTCTATGTCTGTTGTATAAGA
GTCTGTTCCCAGCCTTTCAGGTCACTAAAGGCCCCTCCACCTTTCTAAGC
AGAAATATCACAACTGACCAACAGCTCTTTGGTGGAACTGAAAAGGGTTT
AGTCTTTTAGAAAACATCACCTGGCTATGCTGAGCCACGCGCAATGAAGG
ATACTCTCCCCATTTCAAAGCTTGTATCCCTACTCACATCTGCAAAGCCA
CTTTTGCTGTGAAAAGTCCTCATGGACTCCAGGAATGAGAGGGGCCATGA
CTTAGCCAGTAACACCTCTACCCTGACAGCACCTTTCCCTACTCCTTGAT
GACATATTCAGATATGATCGGCCTTAGTTCACCATCTCTGCAGTTGCTGC
GAAGCACACGACGAATTACACTCCCAGCTGCTGTCGACATGGGGATCACT
GCTAATCCCCGAGGACTCACACTGGTCGGAACGTCAGAACCGTATGTACC
TCCCATTCTACAACCCACGTGAACTTCCATTTTTGCTACGCTGGCCTGAC
TAGATTCGTTACCGCATATCCCTAGTTACGCCGCTGGTTTACCACCTTTT
CTCCATGATTAGTCCCCTCCCCTGTTTTAACTGTCCCTTCCCCCTTCCAC
ATTTTACCCCTTCCGTGTAGCCTGATTTGCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_k04.b1 MSMg01no155_k04.b1 CHROMAT_FILE:
MSMg01no155_k04.b1 PHD_FILE: MSMg01no155_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:34 2005
         (364 letters)



>mm_chr1_59293849_59294612
          Length = 764

 Score =  634 bits (328), Expect = 0.0
 Identities = 352/360 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgatcctgttgccttcatctcacaaatgttgggattacagacgtgtgcagcca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaattcctgatcctgctgccttcatctcacaaatgttgggattacagacgtgtgcagcca 570

                                                                       
Query: 65  tgttctgataggtaagattttctcttcatctctcgcagtttgaggaggtaacaaaacttg 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 569 tgttctgataggtaagattttctcttcatttctcgcagtttgaggaggtaacaaaacttg 510

                                                                       
Query: 125 cagtagcttccatcctcaagcgcggccgatcgttaccatggaaacgcttattgagttagg 184
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 509 cagtagtttccatcctcaagcgcggcctatcgttaccatggaaacgcttattgagttagg 450

                                                                       
Query: 185 tcctttcactgagtcttcggttgcttctaaagtgcgcccgccctaggacgattggttctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcctttcactgagtcttcggttgcttctaaagtgcgcccgccctaggacgattggttctg 390

                                                                       
Query: 245 ccctgactaaatggtttgcctgcagtcgctgacgcgttcggagcaatcttgatccctgtc 304
           |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 389 ccctgactgaatggtttgcctgcagtcactgatgcgttcggagcaatcttgatccctgtc 330

                                                                       
Query: 305 ggacgccgtcaccggctcttgcctagctccacccattctgcgggtccgcctctccagccc 364
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 329 ggacgccgtcaccggctcttgcctagctccacccattctgcgggcccgcctctccagccc 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_k04.g1 MSMg01no155_k04.g1 CHROMAT_FILE:
MSMg01no155_k04.g1 PHD_FILE: MSMg01no155_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:34 2005
         (285 letters)



>mm_chr1_59155819_59156503
          Length = 685

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaattctatgtctgttgtataagagtctgttcccagcctttcaggtcactaaaggccc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 ctgaattctatgtctgttgtataagagtctgttcacagcctttcaggtcactaaaggccc 260

                                                                       
Query: 61  ctccacctttctaagcagaaatatcacaactgaccaacagctctttggtggaactgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccacctttctaagcagaaatatcacaactgaccaacagctctttggtggaactgaaaa 320

                                                                       
Query: 121 gggtttagtcttttagaaaacatcacctggctatgctgagccacgcgcaatgaaggatac 180
           |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtttagtcctttagaaaacatcccctggctatgctgagccacgcgcaatgaaggatac 380

                                                                       
Query: 181 tctccccatttcaaagcttgtatccctactcacatctgcaaagccacttttgctgtgaaa 240
           | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccccatttcaaagctcgtatccctactcacatctgcaaagccacttttgctgtgaaa 440

                                                        
Query: 241 agtcctcatggactccaggaatgagaggggccatgacttagccag 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcctcatggactccaggaatgagaggggccatgacttagccag 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)