BAC Information

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BAC

Clone NameMSMg01-155M10
Chromosome1 (Build37)
Map Location 175,112,706 - 175,113,046
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889
Downstream geneOlfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155M10.T7 (MSMg01no155_m10.b1)MSMg01-155M10.TJ (MSMg01no155_m10.g1)
ACCAG356695AG356696
length738756
length of high quality
(start - end)
525 (69 - 593)357 (72 - 428)
definitionCHROMAT_FILE: MSMg01no155_m10.b1 PHD_FILE: MSMg01no155_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:45 2005CHROMAT_FILE: MSMg01no155_m10.g1 PHD_FILE: MSMg01no155_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAATCCGCGGAAT
TCTTTGAATTACCCGTGGAAATATGATACATACAGGGAAGATGATAAATT
GGGTTTTAGCAAAATACTTGACTTTATGGAAAACCCTGTTGGTTGGATGA
AAACACAATCTTCTAAAAATATTTATTATTACTTTTTCTCAGTCCAATCG
CTGTCCTCCCTTTCTATCCCCCCTCATAGAATTCTTTCACAACTCCCCCT
ACTTTTCTCTGAGATGGCGGGACCTCTCTGGTTATCCCCTGATCCTGGCA
GATCAAGTATCTGCAGTTATGTGTATCCTCTCTCACTGAGGCCAGAATAG
TCAGCCCTGTTGGAGAACAGATTCCACAGACAGGCAGCAGCTTTAAGGTC
TGCCCCCATTCCAGTTATTGGGGGACCCACACAAAGACTGAGCTGCCTAT
CTATTCCTTATGTGTCAGGGGCTTTGGTCCAGCCCGTATATGTACTTTGT
TTGGTGGCTCAGTCTTTGAGAACTCTCAAGGGTCCAGGTCAGATGACTTT
GTTGGTCTTCCTGTGGAGNTCCTTTCCCCTTCAGGGCCTTCAGTCCTTCG
CCCAACTCTTCTGTAAGAGTCCTGAACCTCTGTCCGGTCTTTGGTTATGA
GTTTCAGCCAGCTCCTGTGTAGAGCCTCTCATAGGTACAGCCCTGCTATA
CTGTCTGCAAGCATAACAGAGTCTCATTATTATACTGT
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAATGAAAGGGATCTAAGGATAGGCTGT
GAAGAGGAAAGGGGATATGACCTCAAAAGACCTTCTAATCAACATAGGAT
AGTCAAGGGAGTCTGGCCATAGCATTTGAATGCAATGGCCATTGGTCTAA
TTCTTTGCTTCTTCCTGAAGATAAGCCAGATGGAGGAGAAGTGCTTCTCA
GGCTAATGATAAAAGCATCCTTCATAGAAAAAAATTTTTTTAAGTCTCAG
AAAGTAAGAGGGTGTTGTTGGTGAAGAAGATTGCTGGAGAATTCTGAAAA
TCGGAGAAGAAGGGAAGGTCAAGAAGAAATCTCTGTGGGAACTTCCTGAG
AGTTGAGTTGAACCCGCGAGTTGACCTGGCGAATAGCACAAGGATCAGCA
CAATGGATTTCGAAATGTTCTTTCTGGATGAGACTTCTTCCTCTCATAAA
CCAAGTCACCAATGTAGTGAACAGGAATTTAGCGGAAAAGGAAGCCAATA
CCTCACCTTTCTGAAAGAAATTATTTGATTCCCAATACCCTTATTAAATT
ATACACACTTTCCTTTTTTCTATTCCCCCATCTACCTTGATAAACGCCTA
TAGTAAGGAACTTCTCACTTGCCACCTTTCCCCACCCCGCCTTTTTAAGG
CCTTTGAAAAACGAACCACCAATTTTACCATTTCTTCTTTCACTTTTAAT
CACCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_m10.g1 MSMg01no155_m10.g1 CHROMAT_FILE:
MSMg01no155_m10.g1 PHD_FILE: MSMg01no155_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:45 2005
         (357 letters)



>mm_chr1_175112506_175113262
          Length = 757

 Score =  621 bits (321), Expect = 0.0
 Identities = 336/341 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgaaagggatctaaggataggctgtgaagaggaaaggggatatgacctcaaaagac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 541 caaatgaaagggatctaaggataggctgtgaagaggaaaggggatatgaaatcaaaagac 482

                                                                       
Query: 61  cttctaatcaacataggatagtcaagggagtctggccatagcatttgaatgcaatggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cttctaatcaacataggatagtcaagggagtctggccatagcatttgaatgcaatggcca 422

                                                                       
Query: 121 ttggtctaattctttgcttcttcctgaagataagccagatggaggagaagtgcttctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttggtctaattctttgcttcttcctgaagataagccagatggaggagaagtgcttctcag 362

                                                                       
Query: 181 gctaatgataaaagcatccttcatagaaaaaaatttttttaagtctcagaaagtaagagg 240
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 361 gctaatgataaaagcatccttcatagaaaaaaaaatttttaagtctcagaaagtaagagg 302

                                                                       
Query: 241 gtgttgttggtgaagaagattgctggagaattctgaaaatcggagaagaagggaaggtca 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtgttgttggggaagaagattgctggagaattctgaaaatcggagaagaagggaaggtca 242

                                                    
Query: 301 agaagaaatctctgtgggaacttcctgagagttgagttgaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaagaaatctctgtgggaacttcctgagagttgagttgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)