Query= MSMg01no156_a22.b1 MSMg01no156_a22.b1 CHROMAT_FILE:
MSMg01no156_a22.b1 PHD_FILE: MSMg01no156_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:05 2005
(275 letters)
>mm_chr1_17178726_17179403
Length = 678
Score = 333 bits (172), Expect = 9e-96
Identities = 249/278 (89%), Gaps = 12/278 (4%)
Strand = Plus / Minus
Query: 4 ggaattccctatgcatgcaatttacctggagttctggcaactggcatgacctctggtcct 63
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggaattccctatgcatgcagcttacctggagttctggcaactggcatgacctctggtcct 349
Query: 64 gtctctactcaagctggggagttatggggctgggacacagcaactgggtggggaagg--- 120
||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 348 gtctccactcaagctggggagtta-cgggctgggacacagcaactggatggggaaggaag 290
Query: 121 -aagatcaatgggagtaggattgagtctgtgaggactgaaccaaggaaatggaagagttc 179
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 289 aaagatcaatgggggtaggattgagtctatgaggactgaaccaaggaaatggaagagttc 230
Query: 180 cacaggcatacctgttcttctgactgg-catggcctgtagttaag-caggaatcccccac 237
||||||||||||||||||||||||| | | || | || | ||||||||||||||
Sbjct: 229 tacaggcatacctgttcttctgactgttctt---ct-tc-ttctgacaggaatcccccac 175
Query: 238 ttggttcttaatgtacccaaagagcttggacctcacac 275
||||||||||||| || ||||| | |||||||||||||
Sbjct: 174 ttggttcttaatgcacgcaaagtgtttggacctcacac 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 678
Length adjustment: 9
Effective length of query: 266
Effective length of database: 669
Effective search space: 177954
Effective search space used: 177954
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no156_a22.g1 MSMg01no156_a22.g1 CHROMAT_FILE:
MSMg01no156_a22.g1 PHD_FILE: MSMg01no156_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:05 2005
(297 letters)
>mm_chr1_17044047_17044743
Length = 697
Score = 511 bits (264), Expect = e-149
Identities = 282/288 (97%), Gaps = 2/288 (0%)
Strand = Plus / Plus
Query: 1 tcctcctttcagccatctgctgacacaccaattagaagaagcatctttaccaagcagtgt 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcctcctttcagccatctgctggcacaccaattagaagaagcatctttaccatgcagtgt 260
Query: 61 gctggttctctgactgcaactttcccacaaagaatgataacgacaggacacagcaagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctggttctctgactgcaactttcccacaaagaatgataacgacaggacacagcaagctg 320
Query: 121 cataggctgcttggcagtggaatccccatgatgggcagtaataccaattatggtttagtt 180
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataggctgtttgccagtggaatccccatgatgggcagtaataccaattatggtttagtt 380
Query: 181 tgtaaggctct-ccccgaaccccatcactgaacaaattcagtgggagctgatcttgtaca 239
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaaggctcttcccc-aaccccatcactgaacaaattcagtgggagctgatcttgtaca 439
Query: 240 tgctgtccacagagtacataaccaaactacccccagacctcagtgagt 287
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgctgtccacagagtacataaccaaactacccccagacctcagtgagt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
