BAC Information

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BAC

Clone NameMSMg01-156F05
Chromosome1 (Build37)
Map Location 146,070,946 - 146,071,386
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2
Downstream geneRgs1, EG639456, Rgs21, Rgs18, LOC667877, LOC625057, LOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156F05.T7 (MSMg01no156_f05.b1)MSMg01-156F05.TJ (MSMg01no156_f05.g1)
ACCAG357095AG357096
length728725
length of high quality
(start - end)
552 (45 - 596)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no156_f05.b1 PHD_FILE: MSMg01no156_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:25 2005CHROMAT_FILE: MSMg01no156_f05.g1 PHD_FILE: MSMg01no156_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGTTCTTTAATTTTACAGTTGATTACCATAAAGCACCCATCCTC
TAGTGGAGTAGCAAATTAATAATAGTGAAATGTATGGAGAGTGAGTCAGC
AAGTAACTAAGTCATTTTAATCCATGAAGCTCAACAGATTCATCTACCAG
ATGTTAGCCAGCAAACCCCAAGGCCATTGCATATTTTTCAAAGGGTTTAA
AAGGTAAGTAAGAAGCTTAAGCGAGATGAAACATTTTCAGAATCGATAAT
CATTATGAAAACAGTTATCCCTGAGAGGCATTTTAAGAATGACTTAAGAA
ATAATTACCCTAGTTTGATATATCATCTAGACCCACAATGTTTGTCATAA
GATAGTTGAATAACACCCGCCCTTAAAATGAAACATAATTCTGGAGCCAG
GTTTAGTGGTGCATAATTGTAATCCCAGTACATGAGATAACATAAGTTTG
AACAGGAGGATCTTAAGTCTGAGGGTAGCCTGGACCACATAGTAAGGTCC
TGTTAAACAAACAAATAAATAAATGACACACGAAAGAACTCAACAACAAG
GATCATCACAGGGTTAATTGGTTTGCCTTTCTCACACTTGAAATGTTACA
AGTGATTCTGCAGACCTCATTCCATTCAACTTTGTCATGAAGGTGCTTCT
TCCAGAGTATACTAAAATCTCATAACCC
GCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAGAAGTAGATGGATCTATC
TTGATTGGTTGGCTCTGGCTCTAGGGATATGAGTGCCATTGGGAATGGCT
AGGGCTCTTGGGACATTCCAAAACCTTTGCTATGGGTGGGATTGAAGGCT
GGAAACTGTTGCATCATACCAGGTAGCAGGGCAGCTTCTGATTGGCTGTC
CATGGGCCATGGTTTTTCCAGTAACTAACTTTCCCATATTTCCCAAGTTC
TGGAACACAGAAATGTAAGCCTAGTCTCCTGAACTGCCATTTTGAAGCAT
GTCATAGAGTTATTCTGTTTCACGCCCCCGCCCCTGTTTCCACTGGGACT
TGGCTGCTAGGACCCATTCCCCCCCACATAGAGACCACTTGTGATTTCTG
AAATAATTTCCATTTGCCACAATGGGAAGCTTCTTTGATCAGTAGGTATA
TACATTCTAACTCTTATCCTTATAACTACATTAAAGAATCATTTAACATA
TAAAATGATAAAGATTTGGCCTCGGTTGGATGATTTAATGATATCAGGTC
CTATATAATGATTATTTTATCTTAATCAATAACTTACAGAAGTACTTTCC
TTCTTCTTCAGAATTCCAAAAATGTTCCCTGATCTCCACGACCAAAGAGT
TCATTATTCCCCCCTTTATCACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_f05.b1 MSMg01no156_f05.b1 CHROMAT_FILE:
MSMg01no156_f05.b1 PHD_FILE: MSMg01no156_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:25 2005
         (552 letters)



>mm_chr1_146070743_146071694
          Length = 952

 Score =  791 bits (409), Expect = 0.0
 Identities = 433/441 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtgttctttaattttacagttgattaccataaagcacccatcctctagtgga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtgttctttaattttacagttgattaccataaagcacccatcctctagtgga 263

                                                                       
Query: 64  gtagcaaattaataatagtgaaatgtatggagagtgagtcagcaagtaactaagtcattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtagcaaattaataatagtgaaatgtatggagagtgagtcagcaagtaactaagtcattt 323

                                                                       
Query: 124 taatccatgaagctcaacagattcatctaccagatgttagccagcaaaccccaaggccat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taatccatgaagctcaacagattcatctaccagatgttagccagcaaaccccaaggccat 383

                                                                       
Query: 184 tgcatatttttcaaagggtttaaaaggtaagtaagaagcttaagcgagatgaaacatttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcatatttttcaaagggtttaaaaggtaagtaagaagcttaagcgagatgaaacatttt 443

                                                                       
Query: 244 cagaatcgataatcattatgaaaacagttatccctgagaggcattttaagaatgacttaa 303
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagaatagataatcgttatgaaaacagttatccctgagaggcattttaagaatgacttaa 503

                                                                       
Query: 304 gaaataattaccctagtttgatatatcatctagacccacaatgtttgtcataagatagtt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaaataattaccctagtttgatatatcatctagacccacaatgtttgtcataagatagtt 563

                                                                       
Query: 364 gaataacacccgcccttaaaatgaaacataattctggagccaggtttagtggtgcataat 423
           |||||||||  ||  |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 564 gaataacacttgcatttaaaatgaaacataattctggagtcaggtttagtggtgcataat 623

                                
Query: 424 tgtaatcccagtacatgagat 444
           |||||| ||||||||||||||
Sbjct: 624 tgtaattccagtacatgagat 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)