BAC Information

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BAC

Clone NameMSMg01-156J23
Chromosome1 (Build37)
Map Location 163,330,914 - 163,415,326
singlet/doubletdoublet
Overlap geneTnfsf4
Upstream geneRabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6
Downstream geneTnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156J23.T7 (MSMg01no156_j23.b1)MSMg01-156J23.TJ (MSMg01no156_j23.g1)
ACCAG357315AG357316
length756756
length of high quality
(start - end)
262 (440 - 701)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no156_j23.b1 PHD_FILE: MSMg01no156_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:48 2005CHROMAT_FILE: MSMg01no156_j23.g1 PHD_FILE: MSMg01no156_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,330,914 - 163,331,153)(163,415,035 - 163,415,326)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTAGTAACCTCTTTTGATCTAAAAGGAAATCAATTTCTCATTGGG
AACCAAGTGCTCATTTCCACAGATGACGACGAGCACTATTTGGCAATATT
AATCTTCTTCACACAGTGATGGTATTTTCTAAATGAAACTTAGGTATATG
TATATTATGACTGGAGTCTTTATGATAGGATAGCCTACTGTGGATGGAAT
TATGTTTAAAAACATTACATACAAATATACATATAAACACAAATATACAC
CTGACCTATGGATATGATCTCCCTATTTATCTTTGTTGAGTGTTGCTCCC
AGCTATTAGCACTGATTTTATTCCGCCCTCGCCCCCCCGCTAGCAACCCT
GCCTTGATTATTCCTTTCCTCCCGGCGACAATTACCTCTGTGCCCTACAC
TGTCCAAGAACATGCCATTTTCTTCCCACTTCATGGGTTTTGTGTTCCTG
GAAAATGAGCATTAATCCTTTGTGATCATGTGAGTCAAAGGAGCCACGGG
GAGTGTTATGAGTTAACACGTGAAAACACAATGACAACATACAGCATGCT
TCCCTCTCTATAGTCACTGGTGAGATAAACAGAAGAATTACTGTGAAATT
GGAATCTCTAACATCCCATGCTTTGCTGGGCTTCGTGTTCCCGAGCAAAT
TCACTGTCTGTTGGGCTTTTGAAGTTGGGACTTGCTTGGGAGGNTCACAT
ATGCGG
ACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGGATGCTCTTTTGAGGTCTTCCT
ATCATAAAATGCAAAGGCTGAAAAGGATTTAACTTCTCCATCTTCCCAAT
GATGGATTTATGGGTACAGAGATGTAACTATTTAGGATTCCTAAAATTCT
GCTTCTACTCTGTTAAGTAATTAAGTACTTAATTTGCAAGTATTGCAATA
ACACACACTCTACTAATTGATAAGTATGAATATATTTAAGTTTAATGACA
ATATATTTAAACATTCATTTTCCTCAGATTTTTTTAAGGACCAAGATATT
ATTCTAAATAGTCCAAATTTTTATGGTGACCCCCGCCCCCACTCTTAGGC
TACACCCTCAAAGAGGTACAAGCCACCCAGGAAAACAAAATGAATTCTCT
CAATACATATGCTTTTCTATATATTTCAAGGGGACAAAAAAAAGCACAGT
GAATAATAGAGATGGTGTATAATCTATATAACCTGTTTATACTCTCCATG
TACAAATATTATTAATTTTATTTTTTCATAATTATACTAGAACTGCAACT
TAAAGTCTCAAGCTCAGCAACGTACACAAGGAGACTTCCCACCAGCTGCT
GCCAGTTTTTTCCTTTTTGATTCACCCTTACCCCACTCCATATATATGAG
ATGATAACAGTAGAAAACCGGGTAGTCTGGATGTGACCTACTTTCTTGTT
TTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_j23.b1 MSMg01no156_j23.b1 CHROMAT_FILE:
MSMg01no156_j23.b1 PHD_FILE: MSMg01no156_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:48 2005
         (262 letters)



>mm_chr1_163330714_163331375
          Length = 662

 Score =  449 bits (232), Expect = e-130
 Identities = 238/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgccctacactgtccaagaacatgccattttcttcccacttcatgggttttgtgttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgccctacactgtccaagaacatgccattttcttcccacttcatgggttttgtgttcct 260

                                                                       
Query: 61  ggaaaatgagcattaatcctttgtgatcatgtgagtcaaaggagccacggggagtgttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ggaaaatgagcattaatcctttgtgatcatgtgagtcaaaggagccatggggagtgttat 320

                                                                       
Query: 121 gagttaacacgtgaaaacacaatgacaacatacagcatgcttccctctctatagtcactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagttaacacgtgaaaacacaatgacaacatacagcatgcttccctctctatagtcactg 380

                                                                       
Query: 181 gtgagataaacagaagaattactgtgaaattggaatctctaacatcccatgctttgctgg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gtgagataaacagaagaattactgtgaaattggaatctctaacatcccatgcttggctgg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no156_j23.g1 MSMg01no156_j23.g1 CHROMAT_FILE:
MSMg01no156_j23.g1 PHD_FILE: MSMg01no156_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:48 2005
         (294 letters)



>mm_chr1_163414835_163415527
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%), Gaps = 1/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggatgctcttttgaggtcttcctatcataaaatgcaaaggctgaaaaggatttaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttaggatgctcttttgaggtcttcctatcataaaatgcaaaggctgaaaaggatttaact 433

                                                                       
Query: 61  tctccatcttcccaatgatggatttatgggtacagagatgtaactatttaggattcctaa 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 432 tctccatcttcccaatgatggatttatgggtacagagacgtaactatttaggattcctaa 373

                                                                       
Query: 121 aattctgcttctactctgttaagtaattaagtacttaatttgcaagtattgcaataacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aattctgcttctactctgttaagtaattaagtacttaatttgcaagtattgcaataacac 313

                                                                       
Query: 181 acactctactaattgataagtatgaatatatttaagtttaatgacaatatatttaaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acactctactaattgataagtatgaatatatttaagtttaatgacaatatatttaaacat 253

                                                                
Query: 241 tcattttcctcagatttttttaaggaccaagatattattctaaatagtccaaa 293
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tcattttcctcaga-ttttttaaggaccaagatattattctaaatagtccaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 693
Length adjustment: 9
Effective length of query: 285
Effective length of database: 684
Effective search space:   194940
Effective search space used:   194940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)