BAC Information

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BAC

Clone NameMSMg01-156N02
Chromosome1 (Build37)
Map Location 82,712,449 - 82,712,760
singlet/doubletsinglet
Overlap geneCol4a3
Upstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4
Downstream gene5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156N02.T7 (MSMg01no156_n02.b1)MSMg01-156N02.TJ (MSMg01no156_n02.g1)
ACCAG357460AG357461
length709720
length of high quality
(start - end)
318 (45 - 362)---
definitionCHROMAT_FILE: MSMg01no156_n02.b1 PHD_FILE: MSMg01no156_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:03 2005CHROMAT_FILE: MSMg01no156_n02.g1 PHD_FILE: MSMg01no156_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTGGTTTGTTGTTTTGTTTTGTTTCTTGGTCCAGGTTTGCCACA
GGTCATGTGATAATTAACCTGTTTCTAAATAATGATAGAGTAACTAAAAT
TTACCTGACGTGATACTCAGCTTCATGTTTTATTAGGTACTCTGGGCAGC
TGCCTGCAGCGATTCACCACAATGCCGTTCTTATTCTGTAACATCAATAA
TGTATGTAATTTTGCATCACGAAATGATTATTCATACTGGCTGTCAACAC
CAGCTCTGATGCCAGTGGACATGGCTCCAATTAGTGGCAGAGCTCTCGAA
CCCTATATTATTATGTAACACACTCACTCCCTGTGTTTTACAAGAGAGTC
AAGTGAATCACTTAACTTGTAAGGAATGCAACAGTAGAAAGTGGCTGTCA
TGCTATTGGTCTCATTTTACAGATGCACTGTCTGTGAAGGTCCAGCAATG
GCCATAGCTGTTCACAGTCAAACTACTGCTATCCCTCCGTGTCCCCAGGA
CTGGGTTTCTCTCTGGACAGGTTTTTCTTTCATTATGGTAAGAAGAAAAA
AAAAATCCTCAGCCCATTTCCAGTAATGGAAAACGTCTATAAAATCTTGT
GCTGTGTTGAAACATGTGCTCCCCTATCTGTTAACATATAGATGCTTGGC
GATCTGAAA
CGATGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTATCTGACAGCATAAACATTTT
TAATAACTATATCTCTAACCAAAAAAAATTAATTTAATATTTCAACAAAT
TCACATAATAAGGAATATATTATGAATATATAACCATCGGTTTGACATGA
AGAATGAACATGTAGTTTTATACCCCCACTGAACAACAAATATGAGTACT
TCATTTTCTTTGACAAAACACCAAAATCGAAAGTTTCCTAACGTCAACTG
CAAGGGGAAAACTGAAACTGATGAATTTTCCCACTCACAAAGCCAAAGTT
TTAAGGACTTTCTTGTACCCCCCCCCCCCTCCCATCTTAGGGCCTATTTA
TCAAATTGAAAATACTTATTCAATGACCGGGGCCAATCTTCCAAAGGCTG
ATATATTTTCATATATGAAATTTAAAATTCACTTTCATTTCTATCATTAA
TCATTTCATCAAAGAATTGGAAAGTTGTCATTAATGGTTGACTATACAAA
TTTCCCAAAATCCTAAAATTGGCTTGAAAGCCTCAATTACAAGTTGGGGG
TTTTTTGTTTTCGGTTTTTGAAACCAAGTTTCCCTTTTCCACAGGTTACC
CTGCAACCCGGTTTACTCATGTTTGATCTTGAAACTTCCTAGTCCTCCCT
GCCCTCTACATCCACAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_n02.b1 MSMg01no156_n02.b1 CHROMAT_FILE:
MSMg01no156_n02.b1 PHD_FILE: MSMg01no156_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:03 2005
         (318 letters)



>mm_chr1_82712245_82712962
          Length = 718

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctggtttgttgttttgttttgtttcttggtccaggtttgccacaggtcatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctggtttgttgttttgttttgtttcttggtccaggtttgccacaggtcatgt 264

                                                                       
Query: 65  gataattaacctgtttctaaataatgatagagtaactaaaatttacctgacgtgatactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gataattaacctgtttctaaataatgatagagtaactaaaatttacctgacgtgatactc 324

                                                                       
Query: 125 agcttcatgttttattaggtactctgggcagctgcctgcagcgattcaccacaatgccgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcttcatgttttattaggtactctgggcagctgcctgcagcgattcaccacaatgccgt 384

                                                                       
Query: 185 tcttattctgtaacatcaataatgtatgtaattttgcatcacgaaatgattattcatact 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tcttattctgtaacatcaataatgtatgtaactttgcatcacgaaatgattattcatact 444

                                                                       
Query: 245 ggctgtcaacaccagctctgatgccagtggacatggctccaattagtggcagagctctcg 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 ggctgtcaacaccagctctgatgccaatggacatggctccaattagtggcagagctctcg 504

                       
Query: 305 aaccctatatta 316
           ||||||||||||
Sbjct: 505 aaccctatatta 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)