Query= MSMg01no156_n12.b1 MSMg01no156_n12.b1 CHROMAT_FILE:
MSMg01no156_n12.b1 PHD_FILE: MSMg01no156_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:04 2005
(314 letters)
>mm_chr1_38468220_38468933
Length = 714
Score = 542 bits (280), Expect = e-158
Identities = 301/308 (97%)
Strand = Plus / Minus
Query: 5 gaattctgcagattaccctccacactcccagcaccagggatacaagtcatgccactgtac 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattctgcagattatcctccacactcccagcaccagggatacaagtcatgccactgtac 453
Query: 65 ctgacattttacatggaccctgggagttcaaactcggctcttcatcaattttgcctgctc 124
||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 452 ctgacgttttacatggacgctgggagttcaaactccgctcttcatcaattttgcctgctc 393
Query: 125 cccgttccccagaacttttgatttaaaaacaaaaatctaattttctttgtgaatatattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 392 cccgttccccagaacttttgatttaaaaacaaaaatctaattttctttgtgaataaattg 333
Query: 185 gctacacattttgtcattcagcaggcatcctgtaggattaactgttgatttcgcaccatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gctacacattttgtcattcagcaggcatcctgtaggattaactgttgatttcgcaccatt 273
Query: 245 tgctctgccaggacctggtcgtgagcacatacacgagaggtagcatgtccactctaaact 304
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgctatgccaggacctggttgtgagcacatacacgagaggtagcatgtccactctaaact 213
Query: 305 gctcttgc 312
||||||||
Sbjct: 212 gctcttgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_n12.g1 MSMg01no156_n12.g1 CHROMAT_FILE:
MSMg01no156_n12.g1 PHD_FILE: MSMg01no156_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:04 2005
(281 letters)
>mm_chr1_38280653_38281333
Length = 681
Score = 435 bits (225), Expect = e-126
Identities = 258/281 (91%), Gaps = 19/281 (6%)
Strand = Plus / Plus
Query: 1 ccttcccagatccaaactgatggcactgtagttttatcccaaatcttgtttgttttcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttcccagatccaaactgatggcactgtagttttatcccaaatcttgtttgttttcctt 260
Query: 61 ccccgagaagctacttctgtattttacatggcttgtgatgctcctcacgcttggctcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccgagaagctacttctgtattttacatggcttgtgatgctcctcacgcttggctcatt 320
Query: 121 atcacgtctccagttccatttcaatgtggctgtccctgtaccatgaccactgtccatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcacgtctccagttccatttcaatgtggctgtccctgtaccatgaccactgtccatttt 380
Query: 181 ttcaccatcttggtggctgtgccccatctaaggtgtgagctatgcacatgctacactctg 240
|||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 381 ttcaccatct-------------------aaggtgtgagctatgcacatgctacacgctg 421
Query: 241 tgtcttaagtccttgttccctctctactggttattcctttt 281
|||| ||||||||||||||||||| |||||||||||||||
Sbjct: 422 tgtcagaagtccttgttccctctcttctggttattcctttt 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
