BAC Information

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BAC

Clone NameMSMg01-157D13
Chromosome1 (Build37)
Map Location 137,409,744 - 137,535,071
singlet/doubletdoublet
Overlap geneNav1, EG215714, LOC623327
Upstream gene4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9
Downstream geneCsrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157D13.T7 (MSMg01no157_d13.b1)MSMg01-157D13.TJ (MSMg01no157_d13.g1)
ACCAG357760AG357761
length736731
length of high quality
(start - end)
631 (65 - 695)288 (68 - 355)
definitionCHROMAT_FILE: MSMg01no157_d13.b1 PHD_FILE: MSMg01no157_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:31 2005CHROMAT_FILE: MSMg01no157_d13.g1 PHD_FILE: MSMg01no157_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,534,483 - 137,535,071)(137,409,744 - 137,410,031)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
AGCTATCCCTCGAAATGGTGTCCATCACAAAGCTGACCCTACTATCTGGA
TGAATGACTGCTCCAGCCCCGTGCTTTTGCCATGCTGTATAACAAGTGTG
TAAGAGTCAAAACCCAGCTGTGCAGTGGTGGCGCACGCCTTTAATTCCAA
CACTTGGGAGGCAGAGGCAAATAGATCTCTCAGTTCGAGGCCAGCCTGGT
CTACAGAGTTAGTTCCAGGACAGCCAGGGCTGTACAGAGAAACTCTGTCT
CGAAAACCAAAAAGGAAAAAAGAAAAAAAAAGTAAAAAACCCTGTAAGGC
TTTTTTTTCCATCCCTGCCTTCTAATTTGCTGCTTCTTCTTAGATAATGT
AGGCACCTGGAAAAAAATAAAAGACAGAGAAGGAAGGTAGTTTTTGTCAT
TGTTTAGCCTCAAGTGACAGGGTGATCCAACAAGAACCTCTTAGTCCAGG
ACCCAGGAGGAAACATACCCTATGTATATATGCACAAGGTGTCTGTCTGC
ATCAGGCCCACCTTAGCTCCGTTGCAGTGGAGTGGCCTCTTGGGGGCTCC
TGGTGAGGTACTGGTCCTGCCTGGCTGAACAGGCCTGATGTACAAGAGGG
AATGGGAAACCATAGGGAACTAGGCCGGCACTCAGAGAAAACAAGCATAT
ACAAATGTATGCAGATGTATGCAAATCTCTGCAGCT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGCAGACCAGGAGACTCCCTCCCTGAAGGGGAA
GCTGCACCTTGTGGAGTACCTAGTTTTTTTTTGTGTGTGTGTGTGTAGGC
TTGAGTTGGCTTTTACAGGGCAAGAAGCAGGGCCCAAGAGGCAGTCACTA
CTTAAATAAATAGCATGCAAATTAGCACTTGCTATTTTCAGCCCACAGGT
CAGGGCACTTTGGTAATTGGACTGCAGATGAAAGAGGAATGCTGTCTAGG
GCTTTGTCAAGTCAGAAAAACAGCCTCCCTGTCAATGGGACTCCTCAGGT
GCTTATTTATGCCCTGCCCTCCCCCATCATGGAGGTGTGACAGAATGGGG
GTGAGACTCTACCCCTGGCTACAGAGGAGAGGCATGTAGGGGTGACTCTG
CAGGCTGCTTTCTGAGAGAAGGAAGACACCTGCTGAGAGGGAGCTGGGGG
TACCAGGCACTTTTCCAGAAAGAACTGCCAGCCAACAAGAGTGAGAGGAA
AAAGGCCTGTGTGTGTCAGATAGACACCCTCTGTGCTCCCTTGGCACTTC
TCCTCGGAGATCCCTCAGGAGCTATGACCTCATTTATCTCCCATGCCAGT
GCCAGCGCCATCAGACTGCCTCTTTACAAGGGGAAACTGAGTGTTGGAAA
GACTGAAAAACGTCCAAGCAAAACATACGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_d13.b1 MSMg01no157_d13.b1 CHROMAT_FILE:
MSMg01no157_d13.b1 PHD_FILE: MSMg01no157_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:31 2005
         (631 letters)



>mm_chr1_137534041_137535071
          Length = 1031

 Score = 1131 bits (585), Expect = 0.0
 Identities = 588/589 (99%)
 Strand = Plus / Minus

                                                                        
Query: 43   actgctccagccccgtgcttttgccatgctgtataacaagtgtgtaagagtcaaaaccca 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 actgctccagccccgtgcttttgccatgctgtataacaagtgtgtaagagtcaaaaccca 972

                                                                        
Query: 103  gctgtgcagtggtggcgcacgcctttaattccaacacttgggaggcagaggcaaatagat 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  gctgtgcagtggtggcgcacgcctttaattccaacacttgggaggcagaggcaaatagat 912

                                                                        
Query: 163  ctctcagttcgaggccagcctggtctacagagttagttccaggacagccagggctgtaca 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  ctctcagttcgaggccagcctggtctacagagttagttccaggacagccagggctgtaca 852

                                                                        
Query: 223  gagaaactctgtctcgaaaaccaaaaaggaaaaaagaaaaaaaaagtaaaaaaccctgta 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  gagaaactctgtctcgaaaaccaaaaaggaaaaaagaaaaaaaaagtaaaaaaccctgta 792

                                                                        
Query: 283  aggcttttttttccatccctgccttctaatttgctgcttcttcttagataatgtaggcac 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  aggcttttttttccatccctgccttctaatttgctgcttcttcttagataatgtaggcac 732

                                                                        
Query: 343  ctggaaaaaaataaaagacagagaaggaaggtagtttttgtcattgtttagcctcaagtg 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731  ctggaaaaaaataaaagacagagaaggaaggtagtttttgtcattgtttagcctcaagtg 672

                                                                        
Query: 403  acagggtgatccaacaagaacctcttagtccaggacccaggaggaaacataccctatgta 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671  acagggtgatccaacaagaacctcttagtccaggacccaggaggaaacataccctatgta 612

                                                                        
Query: 463  tatatgcacaaggtgtctgtctgcatcaggcccaccttagctccgttgcagtggagtggc 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611  tatatgcacaaggtgtctgtctgcatcaggcccaccttagctccgttgcagtggagtggc 552

                                                                        
Query: 523  ctcttgggggctcctggtgaggtactggtcctgcctggctgaacaggcctgatgtacaag 582
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 551  ctcttgggggctcctggtgaggtactggtcctgcctggctgaacaggcctgatgtagaag 492

                                                             
Query: 583  agggaatgggaaaccatagggaactaggccggcactcagagaaaacaag 631
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491  agggaatgggaaaccatagggaactaggccggcactcagagaaaacaag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_d13.g1 MSMg01no157_d13.g1 CHROMAT_FILE:
MSMg01no157_d13.g1 PHD_FILE: MSMg01no157_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:32 2005
         (288 letters)



>mm_chr1_137409544_137410231
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagaccaggagactccctccctgaaggggaagctgcaccttgtggagtacctagtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagaccaggagactccctccctgaaggggaagctgcaccttgtggagtacctagtttt 260

                                                                       
Query: 61  tttttgtgtgtgtgtgtgtaggcttgagttggcttttacagggcaagaagcagggcccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttgtgtgtgtgtgtgtaggcttgagttggcttttacagggcaagaagcagggcccaa 320

                                                                       
Query: 121 gaggcagtcactacttaaataaatagcatgcaaattagcacttgctattttcagcccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcagtcactacttaaataaatagcatgcaaattagcacttgctattttcagcccaca 380

                                                                       
Query: 181 ggtcagggcactttggtaattggactgcagatgaaagaggaatgctgtctagggctttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcagggcactttggtaattggactgcagatgaaagaggaatgctgtctagggctttgt 440

                                                           
Query: 241 caagtcagaaaaacagcctccctgtcaatgggactcctcaggtgctta 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagtcagaaaaacagcctccctgtcaatgggactcctcaggtgctta 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)