BAC Information

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BAC

Clone NameMSMg01-157E06
Chromosome1 (Build37)
Map Location 74,087,183 - 74,087,492
singlet/doubletsinglet
Overlap geneTns1
Upstream genePinc, LOC672208, LOC100043291
Downstream geneRufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157E06.T7 (MSMg01no157_e06.b1)MSMg01-157E06.TJ (MSMg01no157_e06.g1)
ACCAG357792AG357793
length697700
length of high quality
(start - end)
315 (42 - 356)113 (430 - 542)
definitionCHROMAT_FILE: MSMg01no157_e06.b1 PHD_FILE: MSMg01no157_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:34 2005CHROMAT_FILE: MSMg01no157_e06.g1 PHD_FILE: MSMg01no157_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGTGAGCGCCCCTAGGTATGGTTTATGCAGTGCTGGTGAATAAACCC
AAGCAAGCTTCACTTCGCTCATGGTAGGTGAGGTGAGCCAGCAAGCGCTC
AACCAAGTGGGCTACGTGCTTGCCCATTCGCGGTAGTTTTACATCACCCT
CTTCGGAATCTTGCTGTTCTGAATTCTGAACAGGACCCTCTTTGGGAGCA
GGGAGGTGATTAAGCCCTGACCTTCATGGCTGCTCTCTCTCTCTCTCTCT
GTGTCATCAGGCCCTGCCTAATTGTGGGAAGTACTTTCAAACCTTTATTA
GGAAAATGTTGCCTGCCCGCCACCAGTAAGATGTCAGCCAAAGGCCTTCA
GGGAGCAACTGGATCAGTGAAGAATGCAACCTAAGAGGCAGCCATGGGCC
TGGGAAGTGAGGAAGGTAATTGGCAGGAACTCCAGCACACAGGGGACCTC
TAAGGCCACCATGAGCAACTGATCTTGTGTGACTAGAGGGCATGCAAGTC
GCCTAGGAGAAGCTGGGTGGGCAGCCAGCCGGGTCACACACACACCCGGA
ACTTTCTTTACTCCATCCAGTCCCCTGTCTGGAGCACAGCATGCTCTCAG
TGAATGGGAATAAGTGAGAGGATGGTGGGGGCTGGCCCGGTGGATGG
GCATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCCATCTTTGAGGTAAACTTAATCCTGT
CAATAGAGGAAAGATGAAGGTTATTGCACGGCAAAGCCACCCTGATTCTT
GTCTTACCCCGCCCCCCCCCCAAAAAACTGGGGCATGAGGATTTTTCCAT
TGGCTTGCATTTGCAAGGAAAACACTATTTCCTTCAAGTTTGTAAATGAT
AGCAGTAAACATTTGAGGCAAAATAGTAATAAATAATAAGTGAGATATTT
GTGGGGCATAAAAACTACAGTTCTCTTCAAGATTGTTTTTTGAAACAGGG
ACTTGTTTGGTTTCACCCAACGTCCCCACCCAAGGCTGTACAAATTTTAT
ACATGAACACATTTATATATGAAAATGAATATATATAATTTATATATATA
TATAATTTGTATATATAATATACATATATACAAATATTTGTATATGACAT
ATATAATTTGAATATATTATATACATATATACAACTCTGCTTCTATATAT
GTATAGATATAATTTGTATATATGATATATACATAATTTGTACATCCTTG
GCTACATAGCATGTTTGAGGACAACTAAAACCCTGTTTCAAAAAAAACAT
ATGTTTATATATGATTTATATATGTGAATATAATATATCATATATGCTAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_e06.b1 MSMg01no157_e06.b1 CHROMAT_FILE:
MSMg01no157_e06.b1 PHD_FILE: MSMg01no157_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:34 2005
         (315 letters)



>mm_chr1_74086980_74087692
          Length = 713

 Score =  569 bits (294), Expect = e-166
 Identities = 307/312 (98%), Gaps = 2/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggtgagcgcccctaggtatggtttatgcagtgctggtgaataaacccaagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggtgagcgcccctaggtatggtttatgcagtgctggtgaataaacccaagc 263

                                                                       
Query: 64  aagcttcacttcgctcatggtaggtgaggtgagccagcaagcgctcaaccaagtgggcta 123
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 264 aagcttcacttcgctcatggtaggtgaggtgagccagcaagcactcaatcaagtgggcta 323

                                                                       
Query: 124 cgtgcttgcccattcgcggtagttttacatcaccctcttcggaatcttgctgttctgaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgtgcttgcccattcgcggtagttttacatcaccctcttcggaatcttgctgttctgaat 383

                                                                       
Query: 184 tctgaacaggaccctctttgggagcagggaggtgattaagccctgaccttcatggctgct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgaacaggaccctctttgggagcagggaggtgattaagccctgaccttcatggctgct 443

                                                                       
Query: 244 ctctctctctctctctgtgtcatcaggccctgcctaattgtgggaagtactttcaaacct 303
           ||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 ctctctctctctctctgt--catccggccctgcctaattgtgggaagtactttcaaacct 501

                       
Query: 304 ttattaggaaaa 315
           ||||||||||||
Sbjct: 502 ttattaggaaaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 713
Length adjustment: 9
Effective length of query: 306
Effective length of database: 704
Effective search space:   215424
Effective search space used:   215424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)