BAC Information

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BAC

Clone NameMSMg01-157E21
Chromosome1 (Build37)
Map Location 170,998,799 - 171,140,135
singlet/doubletdoublet
Overlap genenone
Upstream genePbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157E21.T7 (MSMg01no157_e21.b1)MSMg01-157E21.TJ (MSMg01no157_e21.g1)
ACCAG357821AG357822
length742736
length of high quality
(start - end)		567 (121 - 687)298 (65 - 362)
definitionCHROMAT_FILE: MSMg01no157_e21.b1 PHD_FILE: MSMg01no157_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:37 2005CHROMAT_FILE: MSMg01no157_e21.g1 PHD_FILE: MSMg01no157_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,139,569 - 171,140,135)(170,998,799 - 170,999,096)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAT
TAGAACAAAAAATCTGAAAGGCAATTAAATTTTTCCTTTAACCAGTAATA
AGAAAAAAATGTTAAGACCTTGGCTGATGCTGAACAGCCAAAGTTTAAAG
GATGACATGCACATTTTACTCAAGGAAGTGTCACTCAGCCCTCCACACTT
GGCTCAGGAATGAGCAGTAGTGATTCAAATTAGATCCAGGCAAAACAGGT
CAACCAGAATAACAAAGTGATAAACAGTCACAACAAAGTTCTCAGAAGTC
TTGAGAATGATCTGAGAGTTGGAAACAAGATCAGAAATGAGGCATGCAGT
ATAGTATCACACAGTAGCAACTAAGTGAATAACTCTTCTACCCTTAATAC
TCTGTGGATGCCTGTTATTATCTTATCTCTCTGTGGAGGGGAACCACAGG
GAAAGAACAGTTGAATGGTCTCATCCTGATAAAGGCAATGATCTTCATTC
AAGCATTGTGCTGACTGTCATACACATGTGCTAAGACATTTCAGGTAGAT
GAATATTTTGGAAGTAATCTCAGAATATTTTTCATATCTTTATTTTGAAT
ACTACATCATAATATGAATATTTGGTTCACAATGGTTTGGGAGAGAAAGA
GGATCATCTCATGCCATGAATATGCTACCTACTTCAAGTAGTCTTGAGCA
AGTTACAGTGCAGAACCAACTGGGCTATACAACAGCCCTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGAGATTTCTTTCTAGATCTTTCTGGAAAAAAACAA
AAAACAAAGGAACTCTCATGAATATGACTAAGTTAAGAGTCTCAAAATAG
GTGTGTGGTTTTCGGCCTTTTGTTAGATTCCCATAATAATAAGGATAATG
TATTTATACAAAGAAGCAAAAGATTCTGTATCAACAGATGTGAAGGATGT
GAATGACAGGGGGAAATGGGTGATTGACCAAGGACTGTAGATGCTTCAAG
AAGAAGCAAGATGTACCAATATGTTAGGTAAAAACCCAAGAAAACTGACT
TTGAACTATGACCGTCAGCACCATGCAATGATATACTACAGTGTTACGTC
ACCAAGCTTATGTTAATTTAGACAATAGGAACAGGGAACTTGTATACACA
GGGTTCACTGGATCTTCTTCTTTCAAGAAGACAGGGAAGTAAACAGTCAA
TTCATGCTAACACCTAAAACATGTTGTATCTTTCTTGTGTGTGTTTGTGT
GCATTAAAATAAGCACACAACTTTGCAATAATTATTTGATCTGGGCGATG
CATTGGTATTGAGCTTAGCATCACCATTTCCTTGGAAAGAAACATGTGTT
TAGTAAATGTTATTCACCACTCTCAAGGTCACAAGCAGGAGACTCCCCTG
TTGTAGTATTTTGGGATACACTTACCCCTACTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_e21.b1 MSMg01no157_e21.b1 CHROMAT_FILE:
MSMg01no157_e21.b1 PHD_FILE: MSMg01no157_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:37 2005
         (567 letters)



>mm_chr1_171139369_171140335
          Length = 967

 Score = 1096 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctgatgctgaacagccaaagtttaaaggatgacatgcacattttactcaaggaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tggctgatgctgaacagccaaagtttaaaggatgacatgcacattttactcaaggaagtg 708

                                                                       
Query: 61  tcactcagccctccacacttggctcaggaatgagcagtagtgattcaaattagatccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tcactcagccctccacacttggctcaggaatgagcagtagtgattcaaattagatccagg 648

                                                                       
Query: 121 caaaacaggtcaaccagaataacaaagtgataaacagtcacaacaaagttctcagaagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 caaaacaggtcaaccagaataacaaagtgataaacagtcacaacaaagttctcagaagtc 588

                                                                       
Query: 181 ttgagaatgatctgagagttggaaacaagatcagaaatgaggcatgcagtatagtatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttgagaatgatctgagagttggaaacaagatcagaaatgaggcatgcagtatagtatcac 528

                                                                       
Query: 241 acagtagcaactaagtgaataactcttctacccttaatactctgtggatgcctgttatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acagtagcaactaagtgaataactcttctacccttaatactctgtggatgcctgttatta 468

                                                                       
Query: 301 tcttatctctctgtggaggggaaccacagggaaagaacagttgaatggtctcatcctgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcttatctctctgtggaggggaaccacagggaaagaacagttgaatggtctcatcctgat 408

                                                                       
Query: 361 aaaggcaatgatcttcattcaagcattgtgctgactgtcatacacatgtgctaagacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aaaggcaatgatcttcattcaagcattgtgctgactgtcatacacatgtgctaagacatt 348

                                                                       
Query: 421 tcaggtagatgaatattttggaagtaatctcagaatatttttcatatctttattttgaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tcaggtagatgaatattttggaagtaatctcagaatatttttcatatctttattttgaat 288

                                                                       
Query: 481 actacatcataatatgaatatttggttcacaatggtttgggagagaaagaggatcatctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 actacatcataatatgaatatttggttcacaatggtttgggagagaaagaggatcatctc 228

                                      
Query: 541 atgccatgaatatgctacctacttcaa 567
           |||||||||||||||||||||||||||
Sbjct: 227 atgccatgaatatgctacctacttcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no157_e21.g1 MSMg01no157_e21.g1 CHROMAT_FILE:
MSMg01no157_e21.g1 PHD_FILE: MSMg01no157_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:37 2005
         (298 letters)



>mm_chr1_170998599_170999296
          Length = 698

 Score =  576 bits (298), Expect = e-169
 Identities = 298/298 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagatttctttctagatctttctggaaaaaaacaaaaaacaaaggaactctcatgaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagatttctttctagatctttctggaaaaaaacaaaaaacaaaggaactctcatgaata 260

                                                                       
Query: 61  tgactaagttaagagtctcaaaataggtgtgtggttttcggccttttgttagattcccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactaagttaagagtctcaaaataggtgtgtggttttcggccttttgttagattcccat 320

                                                                       
Query: 121 aataataaggataatgtatttatacaaagaagcaaaagattctgtatcaacagatgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataataaggataatgtatttatacaaagaagcaaaagattctgtatcaacagatgtgaa 380

                                                                       
Query: 181 ggatgtgaatgacagggggaaatgggtgattgaccaaggactgtagatgcttcaagaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatgtgaatgacagggggaaatgggtgattgaccaaggactgtagatgcttcaagaaga 440

                                                                     
Query: 241 agcaagatgtaccaatatgttaggtaaaaacccaagaaaactgactttgaactatgac 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaagatgtaccaatatgttaggtaaaaacccaagaaaactgactttgaactatgac 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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