BAC Information

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BAC

Clone NameMSMg01-157J05
Chromosome1 (Build37)
Map Location 120,804,380 - 120,963,696
singlet/doubletdoublet
Overlap geneGli2
Upstream geneEG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753
Downstream geneLOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157J05.T7 (MSMg01no157_j05.b1)MSMg01-157J05.TJ (MSMg01no157_j05.g1)
ACCAG358021AG358022
length726725
length of high quality
(start - end)
441 (124 - 564)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no157_j05.b1 PHD_FILE: MSMg01no157_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:56 2005CHROMAT_FILE: MSMg01no157_j05.g1 PHD_FILE: MSMg01no157_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,804,380 - 120,804,820)(120,963,411 - 120,963,696)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATGTCATCGCCCCGTCTGGGTAAAACTTGAGTGGTTTTAGTTTGAAAG
AAAATACACATTTCTATAGCACGTTTACAGAGTCGAGTCGGAACGAGGAT
AAGCTTGTGGGTGTGTGAGAAAGAACATATGTGGGTGTAAACAAACCCCG
AAGCTAAGATTTGTACTCATCAGGAAAAGGGCTCCGTTTTCCTCTTTTTA
CTCAGAGAGATAACTGTGCGTGTATTTACATGTGAGCATGTATGTGTGAG
TGCTTGGTATTTGTTTATATGTGTATGCATATGCATATATGTGCGTGCAT
GCATGTGTGATGTATGTTCATGTGTGAGCATGTATGTGTGTATATGTACA
TGTGTATACATATGTGCGCATGTGTAGGTACACATGTGTTATGTGTTCAC
ATGTGTGCTGGTATGTATGGTTAACTTCAGGCTTTTTCCTCTACTGCTCT
CCACTTTACTTTTGAGACAGGAATTCTCACTAACGCTGCAGCACAGGAAG
CCGGCTAGACTGAGCTTGAGGGATCTATTATGTCTAACCCCCACCCGGAG
TACTGGTGTGACAGGGTATTCTATGCCTAGTTTTTACGTGTTTGTTGTGA
CCCGAAAGCTATGTCTTTATGCTTGATGTGCTGCTGGCTCTTCTCATTGT
CTTGTCTCTAACCTGACTTATTTTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGATCCTTCTGCTTCTACCTGCCGAGT
ACTAGAATATAGGCACACGGCACCATCCCTGGTTTATACAGTACTAGACA
GATCCCTTTGTGCGTGATAGGCAAGCAGTCTATCCGCTGATCTTCGTCCG
CAGCCTTTGGTGCTTAGTTCTTTTTGCTTTGTTTTGTTTCATGATTGCTG
GACCAATGCTCTGCCACTGGGATTAAGCATAGCCCTCTCTGATTTAATGA
ACATTTCTGGATTCCTGCCTCAAAGCCTGGGATAAGTGCTGATTACAGAA
ATGAAGTGTTTTTCCTTTGCCACCCCTGGGGAGCAGGTCAAACCCAGAAG
AGGCTGACAGGTCACCACACATCTTTCTAAGGCAGGATACATGTTGAGAA
TGATGACATCGTACATGGAGGATGGCAATGGAGCCCACTGGTAGATGTTG
GCTTTGTGCATATGAAGCTCTGGGTTCCATCCCCAGCACCACATAAACTG
GTGCGATCACTCAGGAGGTAGAGACAAGAGGATTAGGAGTTCAAAGTCAT
ATGGAGTTGAAGGGCTAGGGCTAGGGACTTATGAGAGCAAGACAGAGACC
GAGAGACTGATAGAGAGATGGAGACTGAGAGACAGACTGAGAGACNGAGA
CCGGTAGAAGTATCAAAGACAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_j05.b1 MSMg01no157_j05.b1 CHROMAT_FILE:
MSMg01no157_j05.b1 PHD_FILE: MSMg01no157_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:56 2005
         (441 letters)



>mm_chr1_120804180_120805020
          Length = 841

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacagagtcgagtcggaacgaggataagcttgtgggtgtgtgagaaagaacatatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttacagagtcgagtcggaacgaggataagcttgtgggtgtgtgagaaagaacatatgtg 260

                                                                       
Query: 61  ggtgtaaacaaaccccgaagctaagatttgtactcatcaggaaaagggctccgttttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtaaacaaaccccgaagctaagatttgtactcatcaggaaaagggctccgttttcct 320

                                                                       
Query: 121 ctttttactcagagagataactgtgcgtgtatttacatgtgagcatgtatgtgtgagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttttactcagagagataactgtgcgtgtatttacatgtgagcatgtatgtgtgagtgc 380

                                                                       
Query: 181 ttggtatttgtttatatgtgtatgcatatgcatatatgtgcgtgcatgcatgtgtgatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggtatttgtttatatgtgtatgcatatgcatatatgtgcgtgcatgcatgtgtgatgt 440

                                                                       
Query: 241 atgttcatgtgtgagcatgtatgtgtgtatatgtacatgtgtatacatatgtgcgcatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 atgttcatgtgtgagcatgtatgtgtgtatatgtacatgtgtatacatatgtgtgcatgt 500

                                                                       
Query: 301 gtaggtacacatgtgttatgtgttcacatgtgtgctggtatgtatggttaacttcaggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaggtacacatgtgttatgtgttcacatgtgtgctggtatgtatggttaacttcaggct 560

                                                                       
Query: 361 ttttcctctactgctctccactttacttttgagacaggaattctcactaacgctgcagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 ttttcctctactgctctccactttacttttgagacaggaattctcactaaccctgcagca 620

                                
Query: 421 caggaagccggctagactgag 441
           |||||||||||||||||||||
Sbjct: 621 caggaagccggctagactgag 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_j05.g1 MSMg01no157_j05.g1 CHROMAT_FILE:
MSMg01no157_j05.g1 PHD_FILE: MSMg01no157_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:57 2005
         (286 letters)



>mm_chr1_120963078_120963763
          Length = 686

 Score =  484 bits (250), Expect = e-141
 Identities = 277/286 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatccttctgcttctacctgccgagtactagaatataggcacacggcaccatccctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 619 ttgatccttctgcttctacctgccgagtactagaatataggcacagggcaccatccctgg 560

                                                                       
Query: 61  tttatacagtactagacagatccctttgtgcgtgataggcaagcagtctatccgctgatc 120
           ||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 559 tttatgcagtactagacagatccctttgtgtgtgataggcaagcagtctattcgctgatc 500

                                                                       
Query: 121 ttcgtccgcagcctttggtgcttagttctttttgctttgttttgtttcatgattgctgga 180
            |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctcgtccccagcttttggtgcttagttctttttgctttgttttgtttcatgattgctgga 440

                                                                       
Query: 181 ccaatgctctgccactgggattaagcatagccctctctgatttaatgaacatttctggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccaatgctctgccactgggattaagcatagccctctctgatttaatgaacatttctggat 380

                                                         
Query: 241 tcctgcctcaaagcctgggataagtgctgattacagaaatgaagtg 286
           ||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 379 tcctgcctcaaagcctgggataagtgctgagcacagaaatgaagtg 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)