BAC Information

Click to search

BAC

Clone NameMSMg01-157L06
Chromosome1 (Build37)
Map Location 54,238,851 - 54,239,160
singlet/doubletsinglet
Overlap geneHecw2
Upstream gene1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157L06.T7 (MSMg01no157_l06.b1)MSMg01-157L06.TJ (MSMg01no157_l06.g1)
ACCAG358112AG358113
length736732
length of high quality
(start - end)
318 (42 - 359)608 (72 - 679)
definitionCHROMAT_FILE: MSMg01no157_l06.b1 PHD_FILE: MSMg01no157_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:06 2005CHROMAT_FILE: MSMg01no157_l06.g1 PHD_FILE: MSMg01no157_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTATAGAAGAATTTTCAAGATAGAAAATAAACTACTTTGTTTTATAATC
AGTTCAGCTCAACAGCCATTCATTGAGCCAGATCATGCCAAATGCTACAC
TTCAAAGGTAAATAAGAAGAAATTAATGAATAGCAAACTCCTAGAATGAA
GTTTTTACTCCTACTTTTCATACACACAGTGGCAGACTGTGTATGTTAGC
AATCACCCAATTCCAGCAATCAGTGACAAGATAAATTAGCTCGGTATCTC
TTTGTCACAAGCAGGTGTGAGCTATGGTCTGGACCCATGACTACCCTGCT
GCAGGTTTTCCGCCTAACCTCGCCACATGCCAGCTTCTTTCCAGCCTTCT
GCTTCTTTATTTGCACCCACCCCAAGCTTGATTCCTTGCCTGCTTCTGCA
AGACCCAGGCTCTACTTTTTAAGGCTTTTAAGGCACTTTTTTTTTTCTCA
AAATCTTTCTGGAGGTGAACCATCAAAGCAAATACAGCTCTGTTATCTTT
TTATTTTTTTCTTGTCTTATTATCTCTTTCCCTTAGTGAGCATCCCTTTT
ACTCACTAGGTAGATTTTTAAAAAATCTGGCCCCAATGGGACATACCAAG
AAGTGACATCCCCAGCTACTTCCAAGAGTTGCAGGTCTATGATCCATACA
TACAATCCAGCCATGTTCACATGCAATCACTAACCN
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTTTA
ATGGGGTTATTCGATTTCTGGAGTCCAGCTTCTTGAGTTCTTTGTATATA
TTGGATATTAGTTCTCTATCAGGTTTAGAATTGGTAAAAATCCTTTCCCA
ATCTGTTGGTGGCCTTTTTGTCTTATTGACATTGTCTTTTGCCTTACAGA
AGCTTTGCAACTTTATGAGGTTCCATTTGTCGATTCTTGATCTTACAGCA
CAAGCCATTGCTGTTCTGTTTAGGAATTTTTCCCCTGTGCCCATATCTTC
GAGGCTTTTCCCCACTTTCTCCTCTATTAATTTCAGTGTCTCTGGTTTTA
TGTGGAGGTCTTTGATCCACTTAGACTTGAGCTTTGTACAAAGAGATAAG
AATGGATCAATTCACATTCTTCTACAGGGTAACCACCAGTTATGCCAGCA
CCAATTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCT
TGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCA
ATTCTATTCCATTGATCTACCTGTCTGTCATTGTACCAGTACCATGCAGT
TTTTTTTTTTTTTATCACAATTGCTTCTGTAGTACAGCTTAATGTCTGGC
TTGATGATTCCACCAGAGGTTCTTTTATTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_l06.b1 MSMg01no157_l06.b1 CHROMAT_FILE:
MSMg01no157_l06.b1 PHD_FILE: MSMg01no157_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:06 2005
         (318 letters)



>mm_chr1_54238647_54239364
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctatagaagaattttcaagatagaaaataaactactttgttttataatcagttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctatagaagaattttcaagatagaaaataaactactttgttttataatcagttc 264

                                                                       
Query: 65  agctcaacagccattcattgagccagatcatgccaaatgctacacttcaaaggtaaataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agctcaacagccattcattgagccagatcatgccaaatgctacacttcaaaggtaaataa 324

                                                                       
Query: 125 gaagaaattaatgaatagcaaactcctagaatgaagtttttactcctacttttcatacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagaaattaatgaatagcaaactcctagaatgaagtttttactcctacttttcatacac 384

                                                                       
Query: 185 acagtggcagactgtgtatgttagcaatcacccaattccagcaatcagtgacaagataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagtggcagactgtgtatgttagcaatcacccaattccagcaatcagtgacaagataaa 444

                                                                       
Query: 245 ttagctcggtatctctttgtcacaagcaggtgtgagctatggtctggacccatgactacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttagctcggtatctctttgtcacaagcaggtgtgagctatggtctggacccatgactacc 504

                     
Query: 305 ctgctgcagg 314
           ||||||||||
Sbjct: 505 ctgctgcagg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)