Query= MSMg01no158_a11.b1 MSMg01no158_a11.b1 CHROMAT_FILE:
MSMg01no158_a11.b1 PHD_FILE: MSMg01no158_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:29 2005
(239 letters)
>mm_chr1_39036127_39036765
Length = 639
Score = 451 bits (233), Expect = e-131
Identities = 236/237 (99%)
Strand = Plus / Plus
Query: 1 taacctgcccttagagttcctgaaaataatttcagcaactatggatttttttaaaaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacctgcccttagagttcctgaaaataatttcagcaactatggatttttttaaaaattc 260
Query: 61 cattttgttttcttattgcactagaactactattcctggcatggctaaataacagtgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattttgttttcttattgcactagaactactattcctggcatggctaaataacagtgttt 320
Query: 121 gcacacgtctgtctttctgtctggcatttagtatttctttcttggattccattttcatat 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gcacacgtctgtctttctgtctggcatttagtatttctttctcggattccattttcatat 380
Query: 181 gttgaactgacttccttattcagctgtttgtttttattcagctcttgggcttcattc 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgaactgacttccttattcagctgtttgtttttattcagctcttgggcttcattc 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no158_a11.g1 MSMg01no158_a11.g1 CHROMAT_FILE:
MSMg01no158_a11.g1 PHD_FILE: MSMg01no158_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:30 2005
(499 letters)
>mm_chr1_39180117_39181014
Length = 898
Score = 833 bits (431), Expect = 0.0
Identities = 481/505 (95%), Gaps = 13/505 (2%)
Strand = Plus / Minus
Query: 1 acttcccagactcctctgcagctcttcctggccatgtgactagtttacacccaataggga 60
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 771 acttcccagactcctctgcagctcttcctggccatgtgactaggttacagccaataggga 712
Query: 61 gtgagcagagatgaaaatgttttgcaggaaggacaccccaccaacaccatcacttttccc 120
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 711 gtgagcagagatgaaaatgttttgcaagaaggacaccccaccaccaccatcacttttccc 652
Query: 121 agggcttagctggtgctgagtggtctggaggaattcaagacatggaaaacttggaaagaa 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agggcttagctggtactgagtggtctggaggaattcaagacatggaaaacttggaaagaa 592
Query: 181 ggaggctgagtccttggctgagagttaagctaagcatcacaaagctgcgggcatatggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggaggctgagtccttggctgagagttaagctaagcatcacaaagctgcgggcatatggag 532
Query: 241 ccactatctcatgtgttgacagagattgtaaaattcccagaatgccaagctgtgacctgc 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 531 ccactatctcatgtgttgacagagattgtaaaatccccagaatgccaagctgtgacctgc 472
Query: 301 atctctccctgttcctcctgcatgcttgaaagccctgccta------cccacccacccct 354
|||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct: 471 atctctccctgtgcctcctgcatgcttgaaagccctgcctagggagg-------aaccct 419
Query: 355 ctgagctgattgttactgatgtttcaataatttatgacagttcagagtagcagggcgagg 414
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 418 ctgagctgattgttactgatgtttcaataatttatgacagttctgagtagcagggcgagg 359
Query: 415 atacaatccggggttaaagaacaatggctctatgcaaatcaggcctgaagaaaatgatgc 474
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ataccatccgggattaaagaacaatggctctatgcaaatcaggcctgaagaaaatgatgc 299
Query: 475 cctcacacataatactgctttagag 499
|||||||||||||||||||||||||
Sbjct: 298 cctcacacataatactgctttagag 274
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 898
Length adjustment: 10
Effective length of query: 489
Effective length of database: 888
Effective search space: 434232
Effective search space used: 434232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
