BAC Information

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BAC

Clone NameMSMg01-158E06
Chromosome1 (Build37)
Map Location 27,643,693 - 27,644,004
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik, LOC677427
Downstream geneLOC100040952, EG433281, EG665903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158E06.T7 (MSMg01no158_e06.b1)MSMg01-158E06.TJ (MSMg01no158_e06.g1)
ACCAG358525AG358526
length702703
length of high quality
(start - end)
318 (33 - 350)---
definitionCHROMAT_FILE: MSMg01no158_e06.b1 PHD_FILE: MSMg01no158_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:46 2005CHROMAT_FILE: MSMg01no158_e06.g1 PHD_FILE: MSMg01no158_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAATATGC
ATTAAGGGTTGAAGTAATAGTGCAGTGCTTATGAGAACTTGCTCTACTAA
GGAAGACTCAAATTTGGTGGCCAGCACCCATGCTGGATACCTCACAACCT
TCTATAACTCCAGTTCCAAGGGAATGAATTGTACCCACATACAAATGTTA
TCCTCTCACTTAGACTTATACACATACATCAAGAATACAACAATAAATCC
TATTTCAAAGGGATGTTTTATTAAAAATTAAGCTACTTTTCTACATTTTA
AATTCTAGTAAACACTCCTTAGCAGAGTAATCTTCTCCCAGATATCTGTT
GTTCTTAACCACCACCACTGAGGTTTACAGAAGCTGTTTCAGTGTTAATA
AAAAACTACTTTCAACTGATAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTC
ACACAATATGTACTCACTGATAAGTGGATATTAGCCTATAACCTAGGATA
CC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCATGCAAATGCAATAATTAAGTACTTAAATATTTGTG
AACATCACATCTAATTTTCTATTCCTATGGCTCTGATACCAAAAATAAAT
TGAAAAATAGGGAAAAAAAAAACCTGACAAGAAAAACTGAAGGAAGAAAG
TATTGACTCTGGCCAAAGGATTTCTGGAAATATTTCATCAAGGCATTACT
TTCACAAAAGCTAGATCTTTAGGAACACATTTGCTTTTGCTTTTACAGCA
TAAAGAAAAAGGGTGAAAAAGGTTTTTGCTCAACTCACTTCCTTCGGTTG
TTTTATTTCCAACCCCACGCCTGGAAATTATGTCACCATAGTTGGGGATG
CCACTCACTAACATGAACCTTTCCATTTTCCCTCAGGTAACCAAATTAAG
GTTATCCCACAATGACATATCCAAAGGGTCCCCTGTTGGGGGCTTTCTGA
CCTCAAGTTGACAATAAAAAAAGCCAGCCCACTCGCATTTACTTTATATA
AAAAACAAAGTTGGTAAATCAAATGTGTAAAACCAGGACTCTGGGGTACA
TATGCCATTCAGCATTTATTTGGAATGTGGAATTGTCCTTTATTTTCCCA
CAGCAACTGCAAAATTAAAAGAAAATAAGTTAAATATTAGCTAATACTAC
AAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_e06.b1 MSMg01no158_e06.b1 CHROMAT_FILE:
MSMg01no158_e06.b1 PHD_FILE: MSMg01no158_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:46 2005
         (318 letters)



>mm_chr1_27643489_27644206
          Length = 718

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatatgcattaagggttgaagtaatagtgcagtgcttatgagaacttgctcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatatgcattaagggttgaagtaatagtgcagtgcttatgagaacttgctcta 264

                                                                       
Query: 65  ctaaggaagactcaaatttggtggccagcacccatgctggatacctcacaaccttctata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 ctaaggaagactcaaatttggtggccagcacccatgctggatacctcacaaacttctata 324

                                                                       
Query: 125 actccagttccaagggaatgaattgtacccacatacaaatgttatcctctcacttagact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actccagttccaagggaatgaattgtacccacatacaaatgttatcctctcacttagact 384

                                                                       
Query: 185 tatacacatacatcaagaatacaacaataaatcctatttcaaagggatgttttattaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatacacatacatcaagaatacaacaataaatcctatttcaaagggatgttttattaaaa 444

                                                                       
Query: 245 attaagctacttttctacattttaaattctagtaaacactccttagcagagtaatcttct 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 attaagctacttttctacattttaaattctagtaaacactcctgagcagagtaatcttct 504

                       
Query: 305 cccagatatctg 316
           ||||||||||||
Sbjct: 505 cccagatatctg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)