BAC Information

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BAC

Clone NameMSMg01-158F22
Chromosome1 (Build37)
Map Location 51,967,075 - 51,967,331
singlet/doubletsinglet
Overlap geneMyo1b
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneEG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158F22.T7 (MSMg01no158_f22.b1)MSMg01-158F22.TJ (MSMg01no158_f22.g1)
ACCAG358599AG358600
length728730
length of high quality
(start - end)
313 (45 - 357)257 (76 - 332)
definitionCHROMAT_FILE: MSMg01no158_f22.b1 PHD_FILE: MSMg01no158_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:53 2005CHROMAT_FILE: MSMg01no158_f22.g1 PHD_FILE: MSMg01no158_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGGCTTGGCCCTTGTCAGCATTGAGGTAGGTCTCTAGCCCCTTTT
ACTGGCTGGGTTTGTGTGTCAATTTGACACAGGCTGCTGTTATCACAGAG
AAAGGAGCTTCAATTGAGGAGATGCCTCCATGAGATCCAGCTGTGGGGCA
TTTTCTCAATTAGTGATCAAGGGAGGGGGGCCCCTTGTGGGTGGGACCAT
CCCTGGGCTGGTAGTCTTGGGTTCTATAATTAAGCTGAGCAAGCCAGAGG
AAGCAAGCTGGTAAGAAAAATCCCTCCATGGCCTCTGTATCAGCTCCTGC
TTCCTGATCTGTTTGACCCCCCGCCCCGACTTCCTTTGGTGATGAACAGC
AGTATGGAAGTGCACCCCGAATAAACCATTTCCTCCCCAACTTGTTTCTT
GGTCCTGATGTTTGTGTAGGAATAGAGACCCTGACTAAGACACCCCTCAG
TGTTGTAAAAGGACCACAGCATTGACCTTTCAAACGGGTTCTTGCTTTTC
AACTCAAAGAAGAAAACTGTGATCCAACATTCTCCTATCAGGGACACGTC
TCTAGNAGATGTTATTGTTATTTTCTTCTTGAGACAAGGTCTCATTATGT
AGCCTGGGATTGTCTGGACCTCACTATGTTTATTTCTCTGGCTTTGAACT
CCCAAAGTTACAAAGAGCTCTGATTGAA
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGAGAAGGAGTGAGCAACACATG
GGCATTTGTCAGGTCTTAGCTCCAACATCCTTATGTCCTGAGTTCACTGG
GACTGTCACTTCACCACCACCTCAGGTGTATTTGTGTTTTAAAGGCTGTG
CTGAGCCAGAAATGTCCATAAAGGAGGGATATTTCTGTCTTAGTCTCTGT
ACCTGTTGCTGTGTTAAAATACCTTGACAAAGGAACTTAAAGAAATTGTT
CCTTTTGGCTCACACTTCAAGGTACTTGTCAGTCTTAGCTGGGACATCAG
GGCCATATTTGTTCCAGCCCCCTCGCCCCTATTTTCCCCACAGTCAATGG
GCAGAGGGCAGTGAACGCCCGCTGCTGCTGCCGGTCACACATTTCCCACT
CACACCGTCCAGGATCCCAGCCAGAGAGTGACCCACAGTGGATGGGTCGT
TTTACCCTGGCACAATCATAGTAATCCCCACAGACATGCCCAGGGGCCCA
TCTCCTTGGTAATTCTAAATTCTGTCACGTTGATGCTAGCCGTTACCTTC
CTAGTTCACATTGTCCTAACGGGGCCGTTCATGATATTTTTCAAGAAGTG
CATGATTTATGCTGTTGCAAGTACATGCATGAGTACTCTCTGGCATAGGG
CTTTGTTCGTTTGTTTCTCTTTCACCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_f22.g1 MSMg01no158_f22.g1 CHROMAT_FILE:
MSMg01no158_f22.g1 PHD_FILE: MSMg01no158_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:53 2005
         (257 letters)



>mm_chr1_51966972_51967628
          Length = 657

 Score =  482 bits (249), Expect = e-140
 Identities = 255/257 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgagaaggagtgagcaacacatgggcatttgtcaggtcttagctccaacatccttatg 60
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 360 tgtgagaaggagtgagcaacacatgggcaattgtcagatcttagctccaacatccttatg 301

                                                                       
Query: 61  tcctgagttcactgggactgtcacttcaccaccacctcaggtgtatttgtgttttaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tcctgagttcactgggactgtcacttcaccaccacctcaggtgtatttgtgttttaaagg 241

                                                                       
Query: 121 ctgtgctgagccagaaatgtccataaaggagggatatttctgtcttagtctctgtacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctgtgctgagccagaaatgtccataaaggagggatatttctgtcttagtctctgtacctg 181

                                                                       
Query: 181 ttgctgtgttaaaataccttgacaaaggaacttaaagaaattgttccttttggctcacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttgctgtgttaaaataccttgacaaaggaacttaaagaaattgttccttttggctcacac 121

                            
Query: 241 ttcaaggtacttgtcag 257
           |||||||||||||||||
Sbjct: 120 ttcaaggtacttgtcag 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)