BAC Information

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BAC

Clone NameMSMg01-158G08
Chromosome1 (Build37)
Map Location 191,714,454 - 191,714,724
singlet/doubletsinglet
Overlap geneSmyd2
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438
Downstream geneProx1, LOC100039394, EG666975, Rps6kc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158G08.T7 (MSMg01no158_g08.b1)MSMg01-158G08.TJ (MSMg01no158_g08.g1)
ACCAG358619AG358620
length784707
length of high quality
(start - end)
274 (30 - 303)39 (161 - 199)
definitionCHROMAT_FILE: MSMg01no158_g08.b1 PHD_FILE: MSMg01no158_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:55 2005CHROMAT_FILE: MSMg01no158_g08.g1 PHD_FILE: MSMg01no158_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAACAGTTG
GTCCCTATTTCACAGGAGGGGCCAGGGAAACCTTTGTGCATCCTGAACAG
ATCCACACCGTCATTCCACGATGCAGAGGGTGGGAGTGTTTGGGGTTCTG
TTGAAGACCCCTGGGGATGCCTGCTGCTCCTCACGTGCCATTCCATGTGC
TAGTGCTGGGTGTTTGTGTCTGCTGCTGGGCTGCAGGCATCAGGGAAGTC
AGGAGAAGGGGACCTGAGCGAGCAGACCTTGGCTTGGTCAGCTTTCTCCA
GAGAGAGTTTAGGTACCGGCGTTGGCCCTTATGTCAAGGTGAGTTCTCTT
TTTTTTCCCCCCCCCCCCCCCTTTTGTTTAAGAGTAATCGACAACAGGAT
TTTCCTTCCCCCCCCGACAATACAAGCCCATGCCCGTCTTCTGAAGTTCC
GCATCTGTGTCTCTGCCCCATTGAACCATTTGACCATTTTCTGATTTCAC
AGATCCTCTCCCTGTTCTTCATGTTTATTTAATCATTCCTAACTCGCTGT
TTTCCCCTTCCTTCCCATTTCCTGCTTGTCTCCTTTTTTCATTTCCCACT
AATTTCACGTCTTCATAGATTTCCTTCTCTATATTCTTTTATCTTTTTAC
GTCCTCTAACGCATTCCGATCCTTTATACTCGCCCCCCGTATTTCCCCCC
CTCTGGTTACCCTTCTTCTCTATTTTTCTACCCCTTTTTCTCCCTTTTTC
TTCCCCTTTCCTCTCTTTTCCCCCATCTACCCCN
GCCGGGGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXAAATCCCCTCCCAGTGGGAAAAGAAGGCCACCCCCGGAACAAGGGGCA
ATCCGGAAATAAGAAGAATTTCCCAAGAAAAAACCCCCATGGCTCCCGGC
CTCCCAAACTTCCCCTTGGGGGGGGCGGGGGTTTAATTCCTTGGAACCGA
AGTAAACCCGGGGTTTCCAAACCCCAAACCCGGTCCAATTCCCCTGGATC
CGGTCCCCAAGAAAGGAAAAAATTAACGGCCCCGGGGGAAAGGGGGGTGG
CTGGGCAAACCGTCCAGAATAAGCGAACTCCCCCGGAGGTTAACAAATCT
TTTGTCCGCCCCCCCCCCGGCCCGGCGGTTAACCAGGAAGAATGGATTTC
GCCCCCAAAGCCCGAATCTAACCCACCCTTTGGCCCAAGAAAGGCACGGC
CCGGCAACCCGCATCCCCTGGAGAAACCCCCCCGGGAATGGCCCTCTTTA
ACCCAGGTCCAAGGGAAGGCGCAATAATATTTGGTGGGCCACGGTTCCCC
TGGCAAAGAACTTTCCAAATGGAAGCCCTTAAAGCCAAAGGCCGAAAAAA
AACCATAATAGGAACCCCTTTCCGGCCGGGCCTTTAACTGGAAAAAGGAG
GTGAAAAAATTTAGGGGCCCAAAAAGGATCTACGGCTGGGCCAGGGCCCT
GGTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_g08.b1 MSMg01no158_g08.b1 CHROMAT_FILE:
MSMg01no158_g08.b1 PHD_FILE: MSMg01no158_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:55 2005
         (274 letters)



>mm_chr1_191714251_191714924
          Length = 674

 Score =  478 bits (247), Expect = e-139
 Identities = 265/271 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagaacagttggtccctatttcacaggaggggccagggaaacctttgtgcatc 63
           ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |
Sbjct: 474 ggaattccagaacagttggtccctatttcacaggagcagccagggaaacctttgtgcacc 415

                                                                       
Query: 64  ctgaacagatccacaccgtcattccacgatgcagagggtgggagtgtttggggttctgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctgaacagatccacaccgtcattccacgatgcagagggtgggagtgtttggggttctgtt 355

                                                                       
Query: 124 gaagacccctggggatgcctgctgctcctcacgtgccattccatgtgctagtgctgggtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaagacccctggggatgcctgctgctcctcacgtgccattccatgtgctagtgctgggtg 295

                                                                       
Query: 184 tttgtgtctgctgctgggctgcaggcatcagggaagtcaggagaaggggacctgagcgag 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 294 tttgtgtctgctgctgggctgcaggcatcagggaagtcaggagaaggggacctgagtgag 235

                                          
Query: 244 cagaccttggcttggtcagctttctccagag 274
           |||| |||||||||| |||||||||||||||
Sbjct: 234 cagatcttggcttgggcagctttctccagag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)