BAC Information

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BAC

Clone NameMSMg01-158G24
Chromosome1 (Build37)
Map Location 15,981,897 - 15,982,212
singlet/doubletsinglet
Overlap genenone
Upstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
Downstream geneLOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158G24.T7 (MSMg01no158_g24.b1)MSMg01-158G24.TJ (MSMg01no158_g24.g1)
ACCAG358650AG358651
length712794
length of high quality
(start - end)
321 (32 - 352)---
definitionCHROMAT_FILE: MSMg01no158_g24.b1 PHD_FILE: MSMg01no158_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:58 2005CHROMAT_FILE: MSMg01no158_g24.g1 PHD_FILE: MSMg01no158_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCATGAAAA
GTGAAAACCTTGCAGTCAGCCATCAACAGCCATTCAGATACAATGCAGAT
AGGGGTGGGCACTCACAAGCCCCTTCCCTCTCTACTGCCATAGCTAGCCT
GTACCAATATTCTGATGATTTTCAATTCTACATGATAGCCTTGACTTTTT
TCACAGTATGCAGATGCTTGTAGTAATGTGGTTGCCTTCAATTGCTGTGG
CACAAATCTTCCAGCTGGATTCGGTATCCACTCTACTAACTGCCTCTGTT
GGAGTGTAGGTTGTCCCAGTGGGTCCTGGAATATTAGGAGGTAGAGTCTC
CTTTTCTATCCCACCCCACCACTGAGGGTAAGCCTTAAGGTATGATAGCC
CCCCACCCAGCTCCTGACTGTTGTGTGCCACTTCAGGTTAACTCATCATG
CCTTCCTGCCGTGGCAAGCACAGCTGAACCACCCTATCAAACTGTGATGG
TGTGAAGGGGACCAGCCTTCCTGAGTTCCATTCTCAGGACCAGGCATCAT
GAATACATCCTACATACATCATGGGATAAATGGAAACTGGAAGGGTGAAT
ATCTATATAAGCTGCCTAGGCTTGTTTATGCATCCTAAATTGCTAAATAA
TTTAATATGTTAATTTTCCTAATCAATAAAGTGGATTTTTGTTTGTTGAT
TTTGCTTGCTCG
NTAACGATGACAGTNGGGTAAGGCCTGGGNGCGGCCGGNCCTGGGNCCGN
NTCGAAACATTTTTAAAGGGTGGGAACCACCTAATTAAGGCAAAGAGGGG
AAACCCCCGCGGGGGGGAAAAAAATTTCCCCGGCAAAAAAGACCCCGGAG
ACCCCAAAAAGGGGGGGGGGGGAAAAAAAGGGGAAAAAAACCGGGGGGGG
GGAGAAAAAAAAAATTAAAACCCCCCAAAAGGGGGAAAGAGGGGGGCCCC
CCCCCCCTCTTCCCAAAAAAAAAAAAAAAAAAAGAGGGTCCCCGGGGCGG
GTTGGGGTCTCCCCAAAAAAGAGTTCCCCACACAAAGGGGGGGGGGGGGG
GGGGGGGGGGAGAAAAAAAAAAAAAGGGGGGGGGTATTTTTTTGGCGCCC
CCCCCACCAGGAGGGGGAAAAAAAAACACCCCCCCCACCACAAAAAAAAA
AAAAAATCCGCGCCACACACACCCCCCCCCCCGAAAAACACAATATGGGG
GGGGGGGGGGGGGGGGCCCCCCCCTCCCCCCCCCCCCCCCCCCTTACATN
AAAGAAAAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTTTTTTTT
TTTTTTCCTAAAAGGGAACAANAAAAANANCCCAAAGAAAAAAAAAAAGA
GGAGGAGAGGANGGGGGGAAAAAAAAAAAAAAAAAATAACACCGCGCCCC
CCCCCCCGCCAAAAAAAGGGGAGNGGAAAAAAAAAACACCNCCCCCCNCG
GGGGGGGGGGGGGAGGGGAAAGAGGAAAAATAGATACTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_g24.b1 MSMg01no158_g24.b1 CHROMAT_FILE:
MSMg01no158_g24.b1 PHD_FILE: MSMg01no158_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:58 2005
         (321 letters)



>mm_chr1_15981693_15982413
          Length = 721

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatgaaaagtgaaaaccttgcagtcagccatcaacagccattcagatacaatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccatgaaaagtgaaaaccttgcagtcagccatcaacagccattcagatacaatg 264

                                                                       
Query: 65  cagataggggtgggcactcacaagccccttccctctctactgccatagctagcctgtacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagataggggtgggcactcacaagccccttccctctctactgccatagctagcctgtacc 324

                                                                       
Query: 125 aatattctgatgattttcaattctacatgatagccttgacttttttcacagtatgcagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatattctgatgattttcaattctacatgatagccttgacttttttcacagtatgcagat 384

                                                                       
Query: 185 gcttgtagtaatgtggttgccttcaattgctgtggcacaaatcttccagctggattcggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttgtagtaatgtggttgccttcaattgctgtggcacaaatcttccagctggattcggt 444

                                                                       
Query: 245 atccactctactaactgcctctgttggagtgtaggttgtcccagtgggtcctggaatatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atccactctactaactgcctctgttggagtgtaggttgtcccagtgggtcctggaatatt 504

                           
Query: 305 aggaggtagagtctcc 320
           ||||||||||||||||
Sbjct: 505 aggaggtagagtctcc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)