BAC Information

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BAC

Clone NameMSMg01-158I07
Chromosome1 (Build37)
Map Location 24,360,400 - 24,360,715
singlet/doubletsinglet
Overlap geneCol19a1
Upstream geneOgfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1
Downstream geneLOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158I07.T7 (MSMg01no158_i07.b1)MSMg01-158I07.TJ (MSMg01no158_i07.g1)
ACCAG358711AG358712
length710714
length of high quality
(start - end)
322 (34 - 355)295 (62 - 356)
definitionCHROMAT_FILE: MSMg01no158_i07.b1 PHD_FILE: MSMg01no158_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:03 2005CHROMAT_FILE: MSMg01no158_i07.g1 PHD_FILE: MSMg01no158_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCGGGAC
ATTACCTATTTTTCCATCATCCAGTCTTGAGTAAAATATTCTAGGTCTGT
TAGATGAATTATTGCCGAAAGCAGCCATTGAAATGAGGGAGGCCGTAGAT
TTTCGAGTCAATACATGTAAGTTAATATCTTATTCTTGAAGCCTGGGAGA
CAAGTTATCCCATACACATTGCTCTTTCTGAAAATATATATAAATAAAGG
AGGAATTTGACACTATGGGTAGCAGCATTAACAGTCAGATGAGGCACTAT
GGGTCTAGGTGTCAAGTATTTGATCCATGAAGCCACAGTTACACTGATAC
TTATTTTTCAAACACCCTATAAAATAAGGGAACTTCAGACTAATCTCATT
TATGACCACCGACGCAAAAATACTTAATAAAATTCTTGGAAACTGAATCC
AAGAACACATAAAATCATCATTCACCATGATCAAGTAGGCTTTATCCCAG
AGATGCAGGGATGGCTCAATATGTGGAAATCTATCAATGTAATTCACTAT
ATAAACAAACTCAAAGGAAAAAAAATCACATGATCATCTCATTAGATGTT
GGGAAAGGCTTTGACAAAATACAACACCCCCTTCATGTTGAAAGTCCTTG
GAAAAGATAAGGAATTTAAGACCCCTACCTTAACCTTTATAAAACCCCAT
ATTCCTCCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTTCCTGTAGAGTAGGCTTCCAATCCAGTCAGGGGACTG
ATTGTTCATCTCCACCAACATTTTACTGTTATTGCACTGGTAGAAACATC
TTTGCTGGTAGGTCAATATTCAGTATCCAGTACTGGGCAAGACTGTTGCT
GTCTTTTCTCACCCAGCAGCCTGCATAGCATCTTGTAACACCATGAAATA
CAGCCAGCAGGCAGAGTTTCTTGCTTAGTTGAAGACTAATTCTGTATCCT
ACAACCAAAATGTGTGGTGTCTTCACCAATAGGGTCTTACTGTCTAGTTG
AATTATATAACCCCCACCAATGACAATAGACTCCATTGCTTCCAGTGTCT
CTGAGGCCTCTCTGGCCAAAAATTTATAGGGAAATAACTGCTACCCACTG
AACAAAGGAGGTTCTGTGGCCAAGTATGAGAGCAGTAGAACTCTATGGCT
ATAAATCAATATTTAATAAGCAGTTTGACAACACGACCATTTAGAAAACA
ATAATAATAGGCTCTTATTCATGGCCTGGGATCTCTCCAGGCATAGGCTC
TTGTCCAGGTTAAAATAATAGGCATAAATTCTCTCCTGTTTAATGAAGAC
TATGGAACATAATGGACACTGCATTTATTATTTAATGTAAACAAGTGTTA
ATAACCTATATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_i07.b1 MSMg01no158_i07.b1 CHROMAT_FILE:
MSMg01no158_i07.b1 PHD_FILE: MSMg01no158_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:03 2005
         (322 letters)



>mm_chr1_24360196_24360917
          Length = 722

 Score =  542 bits (280), Expect = e-158
 Identities = 307/316 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcgggacattacctatttttccatcatccagtcttgagtaaaatattctaggtc 64
           |||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggacattatgtatttttccatcatccagtcttgagtaaaatattctaggtc 264

                                                                       
Query: 65  tgttagatgaattattgccgaaagcagccattgaaatgagggaggccgtagattttcgag 124
           ||||||||||| || ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttagatgaaataatgaggaaagcagccattgaaatgagggaggccgtagattttcgag 324

                                                                       
Query: 125 tcaatacatgtaagttaatatcttattcttgaagcctgggagacaagttatcccatacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaatacatgtaagttaatatcttattcttgaagcctgggagacaagttatcccatacac 384

                                                                       
Query: 185 attgctctttctgaaaatatatataaataaaggaggaatttgacactatgggtagcagca 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgctctttctggaaatatatataaataaaggaggaatttgacactatgggtagcagca 444

                                                                       
Query: 245 ttaacagtcagatgaggcactatgggtctaggtgtcaagtatttgatccatgaagccaca 304
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaacagtcaggtgaggcactatgggtctaggtgtcaagtatttgatccatgaagccaca 504

                           
Query: 305 gttacactgatactta 320
           ||||||||||||||||
Sbjct: 505 gttacactgatactta 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)