BAC Information

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BAC

Clone NameMSMg01-158K05
Chromosome1 (Build37)
Map Location 69,742,048 - 69,742,335
singlet/doubletsinglet
Overlap genenone
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneSpag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158K05.T7 (MSMg01no158_k05.b1)MSMg01-158K05.TJ (MSMg01no158_k05.g1)
ACCAG358798AG358799
length719719
length of high quality
(start - end)
284 (423 - 706)288 (62 - 349)
definitionCHROMAT_FILE: MSMg01no158_k05.b1 PHD_FILE: MSMg01no158_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:11 2005CHROMAT_FILE: MSMg01no158_k05.g1 PHD_FILE: MSMg01no158_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTGAG
GAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAAT
CATCAGGTAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAG
TCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGA
TGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGT
ACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAG
TACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGAT
GCCCTTTTAGGTAACACCCCACACATGCTCCACTATGTTCATAGCAGCCT
TATTTACCCCCACCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAG
CTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTG
GAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAA
TATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAG
ATATAAGATATAATTTGCTAAACACATGAAACTCAAGGAGAATGAAGACT
GAAGTGTGGACACTATGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACTAGAAGATCATGCAAGGCTAAAGGAACATGTGATTGG
TTGATTAGTCGGATAATTTTTTTTTTCTTTTAAAGTAACACTTCATCCTT
TCCTAATACTGATGTAAAAGTATTGACAGCAGTGAAGGGATTCAATGAAG
GTAGCAGAAGATTGATCAAAAGGAGAATCTGTTGGGCAAGGACAGAATAG
ACTCTGTTACACAGATGGCCTGATTAGTGTCGGGTAAGAAAACATGCCTC
TTGGGCATGAAAAGAATAAGCAAACATACAAGTTAGCTTATTAATTTTCT
TATTGTTAAATCGCCCACCCTTTTAAGACACCATCAATTCTTTTTTACTA
TGAACAACCGGAACAGCCATTGAGAGAATATGAGGAGTTTAAAAAGTTAC
AGAAAACATTATAGTTAAAGACCTTGCTAAAGCTGACACAAAGAATAGTT
GCCTCTGAGCTCACCAAACAGGTATAATCTGGAAAATAATGAACTACATA
TTGAAAAGTAATAGTTCTTCTAGATATTGTCTTACTAGAAGACATTGAAT
CAAAAAACTTCAGTTTGATTCAAAGAAGAATATTGGAGTAATGTGGCAAA
GAATAAGCTACATAAGAGATGCCAACAGATGCAGAATAGGGAGAGGACAG
ATCCAGAAACAATCACAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_k05.g1 MSMg01no158_k05.g1 CHROMAT_FILE:
MSMg01no158_k05.g1 PHD_FILE: MSMg01no158_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:11 2005
         (288 letters)



>mm_chr1_69741848_69742535
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagaagatcatgcaaggctaaaggaacatgtgattggttgattagtcggataattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagaagatcatgcaaggctaaaggaacatgtgattggttgattagtcggataattttt 260

                                                                       
Query: 61  tttttcttttaaagtaacacttcatcctttcctaatactgatgtaaaagtattgacagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttcttttaaagtaacacttcatcctttcctaatactgatgtaaaagtattgacagca 320

                                                                       
Query: 121 gtgaagggattcaatgaaggtagcagaagattgatcaaaaggagaatctgttgggcaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaagggattcaatgaaggtagcagaagattgatcaaaaggagaatctgttgggcaagg 380

                                                                       
Query: 181 acagaatagactctgttacacagatggcctgattagtgtcgggtaagaaaacatgcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaatagactctgttacacagatggcctgattagtgtcgggtaagaaaacatgcctct 440

                                                           
Query: 241 tgggcatgaaaagaataagcaaacatacaagttagcttattaattttc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggcatgaaaagaataagcaaacatacaagttagcttattaattttc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)