BAC Information

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BAC

Clone NameMSMg01-158N08
Chromosome1 (Build37)
Map Location 34,684,363 - 34,684,526
singlet/doubletsinglet
Overlap genenone
Upstream genePrim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik
Downstream geneAA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158N08.T7 (MSMg01no158_n08.b1)MSMg01-158N08.TJ (MSMg01no158_n08.g1)
ACCAG358936AG358937
length733736
length of high quality
(start - end)
295 (62 - 356)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no158_n08.b1 PHD_FILE: MSMg01no158_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:26 2005CHROMAT_FILE: MSMg01no158_n08.g1 PHD_FILE: MSMg01no158_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTGCTGTCCAAGCCATTGCATCCTGACAAGCTCTCTGT
GTCTCTCTGTGTCTCTCTGTGTCTCTGTGTCTCTGTCTCTGTCTCTCTCT
GTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTGT
CTCTCTGTCTCTCTCTCTCTCTCCTGCACCTCTGCTTCAGGATTCTCTCA
TGCTGTGCCTTACCCCCAGGTGAAGTCTGACAAGAATTTTTGCCTCTGAC
AAAGCATATCTCAAGCCTGTTGTTCATTTGTCTGGGGCCATTTGATCAGC
TCTAGTTATTTTTCACCCGACTGACTGCTCAGGTCTGAGCCAGCTACCTG
AGGATGCTGACCACCCACTAGAAAGACAGCATCCCCTTGGTCTCCTGGGC
ACAACATTAGCAGAGGAAGCCAGATGGGCTTTGACTTAATGGGCACTTGA
TTTAACAGACTCCTTGAAACATTTTCTGATATGATTTGTAAGCCTCACAT
TGTTAGGGAATGGTACCTGCTCAGGACACCCCAAGACCAAATTCTCAGCA
CAAAGGAGATGTATTTGCCTCAGAGGGACAAAGGGCAGTTAATAAGAGAC
AAAGACAGGATACAGATGATGATGGATAAGAGTATAATGCGACGTTTCTT
TCCAAAAACTAAAATAAATTCCCCCATTTCTTG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAGAGAGAAGCTGTGTTTGCAATG
GCTGATCTGCAGATTAAGAACACCAGTGACCTGGAGGGGCTGGAATGTTG
CAGATCCAGAGCCTAATTACAATGTATCCTGGGCCACCACTAGCCCTCTA
AGTAGTCATTCTTTGCTTGCCTCTGTATCTAACCCAACACCCTGTGACAA
GTAAAACCCTTTTGGAATGTATCAACTTAACAAAAGCCTAATTTCTACCA
ATCAATGGGCTAAGAGTGTTGTCCCACAGCATCCAAGGCCTATTGCAGAG
CTCTCCGTATTTTGCTACCCCCCCCCCTGCCTGGTGTGCCCTGGTGTGTA
CTTGAACAGGGCCCCCACCCAAGAATTCCTTTCTATTACTTCAAAAGGTT
TCTATAATTGCTACCTCATTGGAAAACAGTATTTGGGAAAACCTAAAAAC
CTGTCTTCAGGCCATGTTCGTTCATATTTGTTTCCAGAATAAACCAGATC
TTTTATTTCTTTGAAGCAAGAGCTATTTCTTTCATCCACATATGGTGGGT
CTTATTTTTAGTTTTCTGAGAAAGCTCTGCATTGATTTCCATAGTGAACT
AGTTGATACTCCCAGCAGCAACAGGGAGTAACTATCCCTACCACAAGCAT
CTGTTATTACCCATTTTCTTAATGATTGCCATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_n08.b1 MSMg01no158_n08.b1 CHROMAT_FILE:
MSMg01no158_n08.b1 PHD_FILE: MSMg01no158_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:26 2005
         (295 letters)



>mm_chr1_34684033_34684727
          Length = 695

 Score =  282 bits (146), Expect = 1e-80
 Identities = 160/166 (96%), Gaps = 4/166 (2%)
 Strand = Plus / Plus

                                                                       
Query: 131 tctctctgtctctctgtctc--tctctctctctcctgcacctctgcttcaggattctctc 188
           ||||||||  ||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tctctctg--tctctgtctctgtctctctctctcctgcacctctgcttcaggattctctc 388

                                                                       
Query: 189 atgctgtgccttacccccaggtgaagtctgacaagaatttttgcctctgacaaagcatat 248
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atgctgtgccttaccctcaggtgaagtctgacaagaatttttgcctctgacaaagcatat 448

                                                         
Query: 249 ctcaagcctgttgttcatttgtctggggccatttgatcagctctag 294
           ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 449 ctcaagcctgttgttcatttgtctggggccattcgatcagctctag 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)