Query= MSMg01no158_o16.b1 MSMg01no158_o16.b1 CHROMAT_FILE:
MSMg01no158_o16.b1 PHD_FILE: MSMg01no158_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:32 2005
(314 letters)
>mm_chr1_83373364_83374077
Length = 714
Score = 600 bits (310), Expect = e-176
Identities = 310/310 (100%)
Strand = Plus / Plus
Query: 5 gaattcaattagtctaagattataaaaatgtggcctgtgttagatacgcaatgttttatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattagtctaagattataaaaatgtggcctgtgttagatacgcaatgttttatc 264
Query: 65 catcaatatgtaaataattataataaaccaaacttcagagatttcaagaaaattcattag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catcaatatgtaaataattataataaaccaaacttcagagatttcaagaaaattcattag 324
Query: 125 aaggtgaaaacccgaatttttttttaaagagatgtttctagagaacagacattttacaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaggtgaaaacccgaatttttttttaaagagatgtttctagagaacagacattttacaaa 384
Query: 185 aatcaatgctatttcacctggtaaaacaaatcaataagattatttcaatgactatataac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatcaatgctatttcacctggtaaaacaaatcaataagattatttcaatgactatataac 444
Query: 245 aattatttttcttttgttgttgttgttgttgttgttttgttttttgagacagggtttctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattatttttcttttgttgttgttgttgttgttgttttgttttttgagacagggtttctc 504
Query: 305 tgtatagccc 314
||||||||||
Sbjct: 505 tgtatagccc 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_o16.g1 MSMg01no158_o16.g1 CHROMAT_FILE:
MSMg01no158_o16.g1 PHD_FILE: MSMg01no158_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:32 2005
(253 letters)
>mm_chr1_83522821_83523473
Length = 653
Score = 431 bits (223), Expect = e-125
Identities = 240/253 (94%), Gaps = 12/253 (4%)
Strand = Plus / Minus
Query: 1 ttcacatggtagattttatgtatattggttacagcaaatatatatatatatatatatata 60
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 506 ttcacatggtagattttatgtatattggttacagcaa------------atatatatata 459
Query: 61 tatatgagagataaaactgaaactctcaaattcttctaaatgaagatgttaagatattgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 458 tatatgagagataaaactgaaactctcaaattcttctaaatgaagatgttacgatattgc 399
Query: 121 atttattttactttaggtactctaaacacaactctgttgaagaaaacaaatcaaattaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atttattttactttaggtactctaaacacaactctgttgaagaaaacaaatcaaattaac 339
Query: 181 caaccacatttaggcctgttatggcctgaagaaagggagggaggggaaagggagtgagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 caaccacatttaggcctgttatggcctgaagaaagggagggaggggaaagggagtgagag 279
Query: 241 gctagagagtata 253
|||||||||||||
Sbjct: 278 gctagagagtata 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space: 157136
Effective search space used: 157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
