BAC Information

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BAC

Clone NameMSMg01-159H12
Chromosome1 (Build37)
Map Location 178,625,190 - 178,625,543
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneCep170, Sdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159H12.T7 (MSMg01no159_h12.b1)MSMg01-159H12.TJ (MSMg01no159_h12.g1)
ACCAG359395AG359396
length735739
length of high quality
(start - end)
354 (379 - 732)34 (445 - 478)
definitionCHROMAT_FILE: MSMg01no159_h12.b1 PHD_FILE: MSMg01no159_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:12 2005CHROMAT_FILE: MSMg01no159_h12.g1 PHD_FILE: MSMg01no159_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATATAGCCTGCAGAAAGTGTCCGCTGATGTTCTCAGTGAGGTCTCTGTG
TAAAGATGATCTTTTCAAAAACATGAAATGAGTCAGCGGCAATAGCAGGA
GGAGAGCGAGGTCTCTGTAAGAAGCGAGCTGGCACACAGAGTTCTGAGGG
AAATCCCTGGCTTCAAAAGCACAGGGTTTGCCTTAGTTACATTAGAACGA
GATGGTAGGAGGCTGGAATCCCCAGAGAATAAAATTGGTCTGATTTCCTA
TCTAAAATCCTGAGGACTACCTCTACACAGACACTCAGACAGACAGACAG
ACAGACTTTCTTACAGACACACCCACACAGAGATCTCATGGGGCTCTGCC
CCTCACAAATGAGGTTATTCATTCATGGATTTATTAGTTGTGTCAAAAAA
TACCTCTATCAGTACAATATCCAGTGATTCAGCAGTGTGTCTTAGTCCAA
CTTGTGTTGCCGTGTCTGAACACTGGGTAGTTTTATATTCAGGAGTGCCT
TTGAGTAAGGGTCTTCTTACTGATGGGGATTCTGCCATGTTCTGGGGTGG
CACAGAGCATAACATGGCAAGAGACACAAAGCTAAGAAACAAAGTCCAAT
TAACTTTACAAAGATGGCGCTGGTGTTTTATAGAGCTTGTGTTAGGCGGA
CAGCCCTGGAGCATGCATCCTTATTCCTTATACCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAACTTTTCAGCTGGGAAACAGGAGT
ACCAGTGAGTACAGCTTTACAAGGTAAGTCTGGCCTTGAACTTTCTAAGG
AAAGTCAAGACAGTCTATCAAAAGTAAAGGGGAAAATAGCTTTACAAGGA
ATGTTTGGCCTTGAACTCTTTCTAGGGTTAGGAGCCCTTTTGTTCTTTTT
CACATGTTATCAAGGGATTAAAATAGGGCTGAAAATTCTAAATGAAATTC
AGGACAATCTATCAAAAGTAAAGCGGGGAGAGAGAGTAGGACCAAAGAGG
AAATATGGTGCACATAATAACTATCCCGGCCTTTCCAAGGGTCTTGAACC
CAAGGAAAAGTTTAGGCCAGGTAAAAATACCTGGGGAGAGATTAGAAGGA
AGGAAAAGAAAAAAGAAAAGAAAAAAGATCATTTAGCGGAAGGCCTCTAG
GAAATACTCGTCACTAAATGAGCTCAGGAAGCCAGCTCTTAGTAGCTCTG
AAGCAAATGAAAAATTCTCCTCTGAGGAAACAAACTGGAAGGAAAAAGCA
GCTCATTACCAGCCAGCTAATCGGTCAAGAAAAAAGCCAAAAGCGGCTGG
CGAAAGCCAGCATGCTGTTCAGCCTCCGGGCAGTCGGCTTCAAGGTCCGC
CCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_h12.b1 MSMg01no159_h12.b1 CHROMAT_FILE:
MSMg01no159_h12.b1 PHD_FILE: MSMg01no159_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:12 2005
         (354 letters)



>mm_chr1_178624990_178625743
          Length = 754

 Score =  677 bits (350), Expect = 0.0
 Identities = 353/354 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagatctcatggggctctgcccctcacaaatgaggttattcattcatggatttattagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agagatctcatggggctctgcccctcacaaatgaggttattcattcatggatttattagt 495

                                                                       
Query: 61  tgtgtcaaaaaatacctctatcagtacaatatccagtgattcagcagtgtgtcttagtcc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 494 tgtgtcaaaaaatacctctatcagtacaatatccaatgattcagcagtgtgtcttagtcc 435

                                                                       
Query: 121 aacttgtgttgccgtgtctgaacactgggtagttttatattcaggagtgcctttgagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aacttgtgttgccgtgtctgaacactgggtagttttatattcaggagtgcctttgagtaa 375

                                                                       
Query: 181 gggtcttcttactgatggggattctgccatgttctggggtggcacagagcataacatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gggtcttcttactgatggggattctgccatgttctggggtggcacagagcataacatggc 315

                                                                       
Query: 241 aagagacacaaagctaagaaacaaagtccaattaactttacaaagatggcgctggtgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aagagacacaaagctaagaaacaaagtccaattaactttacaaagatggcgctggtgttt 255

                                                                 
Query: 301 tatagagcttgtgttaggcggacagccctggagcatgcatccttattccttata 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tatagagcttgtgttaggcggacagccctggagcatgcatccttattccttata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)