BAC Information

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BAC

Clone NameMSMg01-159J19
Chromosome1 (Build37)
Map Location 164,181,336 - 164,181,649
singlet/doubletsinglet
Overlap geneDnm3
Upstream geneTnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, LOC100039703, Dnm3os
Downstream gene5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159J19.T7 (MSMg01no159_j19.b1)MSMg01-159J19.TJ (MSMg01no159_j19.g1)
ACCAG359502AG359503
length754751
length of high quality
(start - end)
324 (44 - 367)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no159_j19.b1 PHD_FILE: MSMg01no159_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:22 2005CHROMAT_FILE: MSMg01no159_j19.g1 PHD_FILE: MSMg01no159_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGAGCACAACTTCATTAATAATAGTAACAGTAGTGATGCTCGTTCC
ATGTAAAGATTCCCTACGAACAATGGATTATCTTCTTCATCTCCTCACCG
TCCCTACCCAGTGTGTGTGTGGCAGCTCTTCTTAGTTCATCTTTGACTAC
CATGAGGCAGAGGGAGAGGCTAACTTTATGACATGTAAGATTCAGTTGGC
AAGGGACAAGTGGAAACAACATCTTCTTGGGTTCCAAGTCTATGTTCAGG
AACAAACTATGCCCCCGGTACATCTTTCTTTCCACAAAATATGTCCTAGA
CACATTTCTCTTCCTTCTGGATTAAACACTAACTTTTAACTTATAGAAGA
ACCGAATGTTTTTATAAGTTACACCTATCAGAAAACAGAAAGACTGCAGA
GACCAAGGTCAGTGCCACAGAGATGAGTCACTTCAATCTAAAAGTCAGAA
AACTAAAGAGTGTGAAGGTTCTAGGCGTCACAGTTTGCTGTATTATTTGA
AGGATGCAGAACAGCTTTGGATGCCAGCTCCAGTGTTGGTGCTTGTAAAT
TCAAATCCAAGCATCAGCACATACTATAACTGTCACCTCGAACACGTTAC
TTAACTTCTCAGAGTTTCAGCTAACCACAGTCACGGAGCCATTGCCACCC
ATACCTTTAGGTCATTGTGAGGATTAAAGAAAAAAAAAAGTGGAAAAGAC
TTGG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTATTCTTCCTGTCATTCTCCATGCAAG
GGTTTTGAAGCTTGAACAAGACAGCGTGTGGAGGTTGGAATGAAAATGGC
CTTCATAGACTCATACATTTGCCTGGGTTGCTCTCAACTGATGAAGTGTT
GGGGAAGTATTAGGAAGGGTAGCCTTATGGAGGAGGTGTGTCCCTGGGGG
AGGGTTTTAAAGTGTCCACACTAGGACCAGTGCCTCTCTGCCCATTACCT
GCAGATCAGGATGCAAAGCTCTTAGCTCCTGCTCTGGCACCATGCCTGCC
TGCTTTCTTTTATTTTCCCCCCCCCCCACCTGAAACTCTAAGCAAGTCTC
ACTGAAATGCTTCCCCTTAACAAAGATAACTTGGCCTTGGTGCCTTTCTC
AGAGATGCTCCGCTGACACACAATGGACATAAAAGAATGTTGAATGTTAT
GTGTGTGCTAAGCCTCAGATCAAAATAATTTTTTTTTCTGGTATTGGGCG
CTTCTAAAAGACTTGATTTTGAGTTCATTTATCTCCTCATTTTTTTCCTT
CAGTCTCTTTGTACGATGCATTCCAATGATTCTTATACTGGTACCTACAA
GAATGTCCTCCATCGCCTAATTATTTTCAGAGCTTGGTTGTGTACTCGAA
ATATATAATTTTCCTAAACTCGCTTTTAACCGATCTTGCCTCCCTCCTAC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_j19.b1 MSMg01no159_j19.b1 CHROMAT_FILE:
MSMg01no159_j19.b1 PHD_FILE: MSMg01no159_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:22 2005
         (324 letters)



>mm_chr1_164181133_164181857
          Length = 725

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagagcacaacttcattaataatagtaacagtagtgatgctcgttccatgtaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagagcacaacttcattaataatagtaacagtagtgatgctcgttccatgtaa 263

                                                                       
Query: 64  agattccctacgaacaatggattatcttcttcatctcctcaccgtccctacccagtgtgt 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 agattccctacgaacaatggattatcttcttcatctcctcactgtccctacccagtgtgt 323

                                                                       
Query: 124 gtgtggcagctcttcttagttcatctttgactaccatgaggcagagggagaggctaactt 183
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 gtgtggcagctcttcctagttcatctttgactaccatgaggcagagagagaggctaactt 383

                                                                       
Query: 184 tatgacatgtaagattcagttggcaagggacaagtggaaac-aacatcttcttgggttcc 242
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 tatgacatgtaagattcagttggcaagggacaagtggaaaccaacatcttcttgggttcc 443

                                                                       
Query: 243 aagtctatgttcaggaacaaactatgcccccggtacatctttctttccacaaaatatgtc 302
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 aagtctatgttcaggaacaaactatgtccccggtacatctttctttccacaaaatatgtc 503

                         
Query: 303 ctagacacatttct 316
           ||||||||||||||
Sbjct: 504 ctagacacatttct 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 725
Length adjustment: 9
Effective length of query: 315
Effective length of database: 716
Effective search space:   225540
Effective search space used:   225540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)