BAC Information

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BAC

Clone NameMSMg01-159O10
Chromosome1 (Build37)
Map Location 42,771,630 - 42,771,915
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3
Downstream geneMrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159O10.T7 (MSMg01no159_o10.b1)MSMg01-159O10.TJ (MSMg01no159_o10.g1)
ACCAG359713AG359714
length850750
length of high quality
(start - end)
195 (44 - 238)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no159_o10.b1 PHD_FILE: MSMg01no159_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:43 2005CHROMAT_FILE: MSMg01no159_o10.g1 PHD_FILE: MSMg01no159_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTGATCCTTACACCAACTGGTTATCCAATACCAAATAGCTATCCCT
GAAAACAAACATACAAGCCACACTACATAGACAGAACAGGTTTCTTTAGG
TGTGTGTGTGTGTGTGTGTGTGTGTGCAGTAACAGTCATTTAAAAAAGAT
AGGCCATGAATTTGAAAGAGTGCAAATAGGGGTGTGTGGTAGGTTTTAAA
AATTATCACCATCCCCTCTCTTTCTTCCCTTTCTTCTACTATTCATTCTA
TTCCCCCCATAAACCATCTCCATTATTTTTTTTTTTCTATAACAATAAAA
AATAAAGAAAAAAATTTGAATAAACTCCAAGAACGAGAGCCCCAAAAAGA
TTTATTTTTTATAAAAGAAAATAATAACCCCCCCCCTAAAAAAAAAAAAA
AAAAAAAATGGTTTGTGGGGGGGGTCTTCCCACCTTTTTTTATAATATAC
ACCACCCCAAACTTTTTTCTTTTTTTTATATTTATCTATACTCCTCATCT
CACAACTTTATTATTCATATATAACAAATTTACTTTAAAATCACACACAC
ACCACCACATTATTTATAATATTTAACAAAAACTATCTTATTTTTTTAAT
ACTAAATTTATCACCTAGCCTTTTATCAACCTATATATACTTTAAAAATA
ACTCTTTCCCCTACGACCTCCCATTGTATACTTACTAACCCTTTTTCCTC
CCTACCACATTTATTATTCTATTCTTAAAAAACCAATACCTATTTTTTAT
AACTATTTTTTACACTTCATGTAATCCTCCCACTCATTCTAATTTTACCG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGAGACTTCCCATCTCAGACCCAAAAGA
AAACCATAAAGACTTTGAATGATACCAGAACCCTATTCAGGCAGGTGTGA
CACCAGGGAACCTGGCAAGCAGTCCTACCAGGAATGGAAGAGAAGGTCCA
AGAAGCAGCCTACAACTGCCCCAGGGCTCTGGAAAGGTGAGCCTGCGAGA
GTGGTCAAGTCTGGAGTTCTAGGGGACGAGAGTTGTGAGAGTAAGAGAAG
GGAAGTCAAGGCTTGAGAGTGTGGATAGAGTTGGGGAAAGGACTCTCCGG
AGCCCAGTTTGTGTTTCTCCCCCGGCTCCCCCCTCCATCTACTTTCAACT
TTTTGCTGTTCCCCCCCCCCGGCGCTCAAAACTTTCTAACCATTTGTGAA
AGTGCTCCTGGTCCGGAACAAAAAGAGCCTTATCGAGAGAGTGTGTAGTG
TTCGTGACCGCCCCCCCCTCCTTTTCTTCCATATATCTTCTCTTCCCCTT
TTTTTTCTATTTTTCCCCCCTTTTCTTTTCTCTAAATTCTTTTAATTTTC
GTTGATCCCCCCCCCTTTTTTTTTCTTGGCGTTTTCCCCCCTTTCTCTTC
CTCCTTTTTTTTATTCTCCTCCTCCCTTTTTTTTTATATTATATTTATTA
ACATTACCCCATTTTTGTCTTTTTTTTAATTTAGTAGTCTCTCCCCCTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_o10.g1 MSMg01no159_o10.g1 CHROMAT_FILE:
MSMg01no159_o10.g1 PHD_FILE: MSMg01no159_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:43 2005
         (286 letters)



>mm_chr1_42771430_42772115
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagacttcccatctcagacccaaaagaaaaccataaagactttgaatgataccagaac 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atgagacttcccatctcaggcccaaaagaaaaccataaagactttgaatgataccagaac 427

                                                                       
Query: 61  cctattcaggcaggtgtgacaccagggaacctggcaagcagtcctaccaggaatggaaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 426 cctattcaggcaggtgtgacaccagggaacctggcaagcagtcctaccaggagtggaaga 367

                                                                       
Query: 121 gaaggtccaagaagcagcctacaactgccccagggctctggaaaggtgagcctgcgagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaaggtccaagaagcagcctacaactgccccagggctctggaaaggtgagcctgcgagag 307

                                                                       
Query: 181 tggtcaagtctggagttctaggggacgagagttgtgagagtaagagaagggaagtcaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tggtcaagtctggagttctaggggacgagagttgtgagagtaagagaagggaagtcaagg 247

                                                         
Query: 241 cttgagagtgtggatagagttggggaaaggactctccggagcccag 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cttgagagtgtggatagagttggggaaaggactctccggagcccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)