BAC Information

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BAC

Clone NameMSMg01-160C22
Chromosome1 (Build37)
Map Location 156,613,229 - 156,613,463
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160C22.T7 (MSMg01no160_c22.b1)MSMg01-160C22.TJ (MSMg01no160_c22.g1)
ACCAG359923AG359924
length703700
length of high quality
(start - end)
568 (60 - 627)239 (111 - 349)
definitionCHROMAT_FILE: MSMg01no160_c22.b1 PHD_FILE: MSMg01no160_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:04 2005CHROMAT_FILE: MSMg01no160_c22.g1 PHD_FILE: MSMg01no160_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATTTCAAGAGGATCCGCGGAATTCCTGATC
TTTCAAGACTTTTATCATGAACGGGTGTTAGATCTTGTCAAATGCTTTCT
CCGATTTTACCCAGATGATCTTGTGGTTTTTGTCTTTGAGTTTGTTTATA
TAATGGATTACGTTGATGGATTTTTGTATATTAAACCATCCCTGCATCCC
TGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTT
GGATTCGGTTAGTGAGAATTTTATTGAGTATTTTTGCATTGATATTCATA
AGGGAAATTGTTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTT
AGGTATCAGAGCAATTGTGGCTTCATAGAATAGTTGGATAGAGTACCTTC
TACCCCCATTTTGTGGAATAATTTGTGCAGAACTGGAATTAGATCTTCTT
TGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTT
TTGGCTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGGGATATGGG
ACTGTTTAGATCGTTAACTTGATCCTGATTTAACTTTGGTACCTGGTATC
TGTCTAGAAATTTGTCCATTTCGTCCAGGTTTTCTAGTTTTGTTGAGTAT
AGCCTTTTGTAGAAGGATCTGATGGCGCTTTGCAATTCTTCATAATCTGT
TGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACCGCTCAGGAAGCCAAGACAGTGAGTCTCCAAAGCAAGCT
GGCTATCTAGCAGAGCCATATTGGGAGAGCTCTGAGTTCAATCAGAGGCT
CTGCATCAATGAATAAGATGAGAGAAACTGAACAAGACTGATATTAGCCT
CTGGTGTCAGCAAACATGTGAACCTATATTCACATGTGCTCACACACATT
GGAAAATACATACATGTACATGCACCACACACACACACACGGAACAAAAA
GGGAACTTGATTAGCTGCGAGTGTTTGTATTCATGGAAGATTTTTTTTTT
TTCCCCCCCCCACACTGAGGGGTAAGTATACTACCGAATGTGCAGTGTAC
AACTGAAAACAGAACAGGTCCTAGCAAGAACCTGGGAGGTATGGCTATTG
CTGCCACTACAACCCTCCCTTAATTCCTCAGTATAAACTGATGGTGCCAG
TTGTGGAGAAGAGAAGATCTGAGGGGAAAGGACACTGGAGATTGTTGAAG
TCAAAAGTTCATCTTTGGGCATGCTGAAGGTGTTCATTAGACACCTGATT
TAGGATGTCAAGGACACAATCAGAGCTAAGCCCCAGGAACTCACAGCTGG
AATGAAGACCAGATCTGTATGGGGGAATCACATGTGTGTGGATTTCTGCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_c22.g1 MSMg01no160_c22.g1 CHROMAT_FILE:
MSMg01no160_c22.g1 PHD_FILE: MSMg01no160_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:04 2005
         (239 letters)



>mm_chr1_156613029_156613667
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagccatattgggagagctctgagttcaatcagaggctctgcatcaatgaataagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagccatattgggagagctctgagttcaatcagaggctctgcatcaatgaataagatg 260

                                                                       
Query: 61  agagaaactgaacaagactgatattagcctctggtgtcagcaaacatgtgaacctatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaaactgaacaagactgatattagcctctggtgtcagcaaacatgtgaacctatatt 320

                                                                       
Query: 121 cacatgtgctcacacacattggaaaatacatacatgtacatgcaccacacacacacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacatgtgctcacacacattggaaaatacatacatgtacatgcaccacacacacacacac 380

                                                                  
Query: 181 ggaacaaaaagggaacttgattagctgcgagtgtttgtattcatggaagattttt 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaacaaaaagggaacttgattagctgcgagtgtttgtattcatggaagattttt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)