BAC Information

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BAC

Clone NameMSMg01-160H21
Chromosome1 (Build37)
Map Location 64,440,447 - 64,440,676
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
Downstream geneLOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160H21.T7 (MSMg01no160_h21.b1)MSMg01-160H21.TJ (MSMg01no160_h21.g1)
ACCAG360150AG360151
length716719
length of high quality
(start - end)
---230 (123 - 352)
definitionCHROMAT_FILE: MSMg01no160_h21.b1 PHD_FILE: MSMg01no160_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:27 2005CHROMAT_FILE: MSMg01no160_h21.g1 PHD_FILE: MSMg01no160_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCCTCTTCTGTAGCTATATATCTGCATGATTGTCCAAGCTTGTTG
TTGTCTAATAATAGCCTACACAATGTGTTGCAATTTTTGTGGGGGTGAGA
CATTATTTGAACTGGATTTACGTATGAAAACGACACCGCTGCGAGTCAGC
TTGAGGCAAATATCCTTATTTCTGTCCTCCATGCAAAGTTCAGAGAAAGC
TAGTGCTGGCATATTGAATGCCGACTTATGCCGCAGTAAGCCTCTACAGT
TATAGTTAGCGGGAGCAATTTTATGGCAATTGCTACATAAAAGACGGCAC
AGAAAGGGTTTAGATATTTACCACCCCCCGCCCCCCCAGCTGTACTATCC
TGACGCCGACCATAGGAACACGGGAAAAAAAAGAGGGGGGCCCAGAATGG
GTGGGGCCTCTGTCTGTCAAACATAAGGGAATGACGAAANCACGGGAGAA
GATGGGGAAAAAAAGGAACACGCAATAAAGGAAAAAGGGGGAAATGGGGT
AGGAAAAAGAGGTGAAACGGGAAACGGGGAAAAAGGAGGAAAAAAGGGGA
AAAGTGAAAAGAAAAAGGGGGAAAAGGGGAAAAAGGGGAAAAAAAAAAAC
AGGGAAAAGTGGGATAAAAGGGGGGGGAAGGGGAAAAAAAATGAAAGTGG
AAAAAAAAAGGGAAAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACATGTCCTTTGTGTATGTCTTCTGTAAT
TGGAATGGTAACTTAACCACAAGCAAATACACAGCTTAGAAAGTTTTACC
AAACAACATCAGCAGCAGTATTTAGATTCAGCCCCATGTCTTCATGATCA
TTATTGTTCTCCTTTTAGCATTCAGAAACAGGTGGAGAAATTCCACCATT
GCCTTAATTTGCTTGTCTTCAATGGTTAATCAAGGTGATTTATTTTCTCT
ACTCTGGTTGCTCTGACAGCAACAGAAATTCATTCCTCATGGTTCTTGGT
ACTAGAATTCTGAACTCAGGCGTTAGCAGAGTTGTGTTCATTTCATAGGG
TGTAGGAACCCACCCCTTTCTTGACTCTTCTGGGCCCTGGAGACTGTTGA
TTTTCCTTGGTCTGTGTACGTGTTATTGATTTCTTATGACTTCCTTTATT
AACCTTAGTACAGATACATTGGCAGAGATACTTTCCGCAGGTCTTTGGTC
TCTCTCTAACTTGACTTTCCACTCTTGTAATTGTCCCTGGCTCTCACATT
TTAATCGATCAATTGGTAAGTTCATGGAAATCCTGTGACTTTCCCAGATG
TGCATCTAACTAGATAAGACGAATTGCTTATTATCCTCACATCCTTTTCC
CAAGTTTTTCAGATGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_h21.g1 MSMg01no160_h21.g1 CHROMAT_FILE:
MSMg01no160_h21.g1 PHD_FILE: MSMg01no160_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:28 2005
         (230 letters)



>mm_chr1_64440247_64440876
          Length = 630

 Score =  429 bits (222), Expect = e-125
 Identities = 228/230 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaatacacagcttagaaagttttaccaaacaacatcagcagcagtatttagattcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gcaaatacacagcttagaaagttttaccaaacaacatcagcagcaatatttagattcagc 260

                                                                       
Query: 61  cccatgtcttcatgatcattattgttctccttttagcattcagaaacaggtggagaaatt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 cccatgtcttcatgatcattattgttctccttttagcattcggaaacaggtggagaaatt 320

                                                                       
Query: 121 ccaccattgccttaatttgcttgtcttcaatggttaatcaaggtgatttattttctctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaccattgccttaatttgcttgtcttcaatggttaatcaaggtgatttattttctctac 380

                                                             
Query: 181 tctggttgctctgacagcaacagaaattcattcctcatggttcttggtac 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggttgctctgacagcaacagaaattcattcctcatggttcttggtac 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)