BAC Information

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BAC

Clone NameMSMg01-160M17
Chromosome1 (Build37)
Map Location 165,659,006 - 165,802,942
singlet/doubletdoublet
Overlap geneLOC100039626, Kifap3
Upstream geneBat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207
Downstream geneScyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160M17.T7 (MSMg01no160_m17.b1)MSMg01-160M17.TJ (MSMg01no160_m17.g1)
ACCAG360368AG360369
length708718
length of high quality
(start - end)		321 (45 - 365)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no160_m17.b1 PHD_FILE: MSMg01no160_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:51 2005CHROMAT_FILE: MSMg01no160_m17.g1 PHD_FILE: MSMg01no160_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,802,626 - 165,802,942)(165,659,006 - 165,659,286)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAAGCATTCTCTGCTTTTTGAAAGCTGGATTTCTAATCCTAACCC
AAGACATTTTTCTCTGCAGCATAAGTACTGTCAGATGCATTTCAAGTGCT
CACCTTGGTAGCAAGATTACAAACAAACTTCTCTGTCTGATCAAGATTTT
CTTGGAAATCTTGGTGAGGAAGGTTAATAATTAATGTATAAAAGACTACA
TTTATACTTTTATTAGTTTATCTCATTTAAATAGGTCAGCCCTATAAAAT
TTTCTGTACTTATAATACCTTACTTTTCCAAGTAAAAATACTAGATCTGG
TATTATTTTGATTACCGACCACATTCATTCTGTAACACTGTGTGCGCAGA
CAGGAGCTGCCCCGACTGTCCTTGGAGATGCTGTACTAGTAACTGACAGA
GACAAATGCAGTTACAGCCAACCACTGGATTGAGGTCACGGATCCCTATG
GAAGAGTTAGGGGAAGGACTGAAGGAACTTAAGAGAATTGCAACCCCATA
GGAAGAACAACAGTGTCAACTAACCTGGACCTCTCAGAGCTCCCAGAGAC
TAATCCACCAACCAAGGAGCATACGTGGGCTGGTTCGCGGCCCATAATAC
ATGTGTAGCACAGGATTGCCCTGCATAGACTCATTGGGAAAACATGACCT
TAATCCCT

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCCTTACAGTGATTGGTTTTC
TCTTACGGTTGAAACACTCTATTTGTTGCTGCCCCACACCATCCTTGGCT
ACATTCCCACCAATGAGTAAGGTTATGATATGTATACACCGCAAGTCTAC
CACAGCCATCTAATCTCCAGGCAGAGAAGGAAAAATGACCTTGGGAAGGA
GGAGACCAAGTGAAACACCAAAATTTAATAAGAAAAACCCCTCATTTTGG
AATTCTCTTTCTGCTTGACCCTCATCTTTTCAACTTATAATTTTTCTTTG
AATGTATTTTTTTTTACCCCCCCACCCCAGAAGGTGTATAGTTAGGAGAT
TTATACTAAGAAACCCCCCAAAAAAAAACCTACTCTGTGGCAGGTAAAAT
AGATGAAGTTTCTGTTGGATTCTTTTCTCTAAAAAACTAAAACAACTCAC
AAAAAACAAAATAAAAACCAAGATTTTCTCTTTTATTATTAATTGCTTAA
TTTATTTACATTGAAAATGTTCCCCCCCTCTGATCCCGTCCATGTGCCCC
TCTGTATACTTCTTCCCCCCCTACCCTTTCCTCTTTGCCTCTGAAAGCTC
GTTTCTCTTTTTTCACCATATTTTTATAAATATCTCAATTACTTCTTTAC
TTATTTATTTCCCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_m17.b1 MSMg01no160_m17.b1 CHROMAT_FILE:
MSMg01no160_m17.b1 PHD_FILE: MSMg01no160_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:51 2005
         (321 letters)



>mm_chr1_165802423_165803143
          Length = 721

 Score =  567 bits (293), Expect = e-166
 Identities = 311/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttaagcattctctgctttttgaaagctggatttctaatcctaacccaagacat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggaattcttaagcattctctgctttttgaaagctggatttctaatcctaacccaagacat 461

                                                                       
Query: 64  ttttctctgcagcataagtactgtcagatgcatttcaagtgctcaccttggtagcaagat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttttctctgcagcataagtactgtcagatgcatttcaagtgctcaccttggtagcaagat 401

                                                                       
Query: 124 tacaaacaaacttctctgtctgatcaagattttcttggaaatcttggtgaggaaggttaa 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 400 tacaaacaaacttctctgtctgatcaaggttttcttggaaatcttggtgaggaaggttaa 341

                                                                       
Query: 184 taattaatgtataaaagactacatttatacttttattagtttatctcatttaaataggtc 243
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 340 taattaatgtataaaagactacatttatacctttattagtttatctcatttaaataggtc 281

                                                                       
Query: 244 agccctataaaattttctgtacttataataccttacttttccaagtaaaaatactagatc 303
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 280 agccctataaaattttctgtacttataataccttacttttccgagtaaaaatactagatc 221

                            
Query: 304 tggtattattttgatta 320
           ||| |||| || |||||
Sbjct: 220 tggaattaattcgatta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no160_m17.g1 MSMg01no160_m17.g1 CHROMAT_FILE:
MSMg01no160_m17.g1 PHD_FILE: MSMg01no160_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:51 2005
         (282 letters)



>mm_chr1_165658806_165659487
          Length = 682

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcccttacagtgattggttttctcttacggttgaaacactctatttgttgctgcccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcccttacagtgattggttttctcttacggttgaaacactctatttgttgctgcccca 260

                                                                       
Query: 61  caccatccttggctacattcccaccaatgagtaaggttatgatatgtatacaccgcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccatccttggctacattcccaccaatgagtaaggttatgatatgtatacaccgcaagt 320

                                                                       
Query: 121 ctaccacagccatctaatctccaggcagagaaggaaaaatgaccttgggaaggaggagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaccacagccatctaatctccaggcagagaaggaaaaatgaccttgggaaggaggagac 380

                                                                       
Query: 181 caagtgaaacaccaaaatttaataagaaaaacccctcattttggaattctctttctgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtgaaacaccaaaatttaataagaaaaacccctcattttggaattctctttctgctt 440

                                                    
Query: 241 gaccctcatcttttcaacttataatttttctttgaatgtat 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaccctcatcttttcaacttataatttttctttgaatgtat 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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