BAC Information

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BAC

Clone NameMSMg01-160N16
Chromosome1 (Build37)
Map Location 186,146,728 - 186,147,026
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666649, 1700056E22Rik, Dusp10
Downstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160N16.T7 (MSMg01no160_n16.b1)MSMg01-160N16.TJ (MSMg01no160_n16.g1)
ACCAG360413AG360414
length727735
length of high quality
(start - end)
309 (47 - 355)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no160_n16.b1 PHD_FILE: MSMg01no160_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:55 2005CHROMAT_FILE: MSMg01no160_n16.g1 PHD_FILE: MSMg01no160_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGAATTTGCTGGTGGTTCTCTGTATACGGTTCCCACTCAGGCC
TGGCACACATCCGGCCTTATACCTGATAGACCAGGGTTTCTAACAAAAAG
AATGCTGCTTTCCTCCTGCCATCGAACCTTGTAAGGGCCAGATGATTCTG
CAGGACAGATTCATCCTGGCTCCCTTACCTGGACAGGTGAGAGTGTGACG
ACACCCTGTAAGAGGGCTCAGCAGGTAAAAACACTTGCCATATAAGCCTA
CAGGGATGTGAGTTTGATCCCTGGAACCCATGGTAGAATTAGAGAACCAA
CTCTTGTTATATTGTCCACTGCCCTCCACACACATCGTATCATAACATGC
ACACACCTACACACATACTCAGAAAGTCTTTTCTTCTTTTTAAAGAATAT
AAACTTTGAGGTGCCTTTAGGAAGTTTGCCCTACCTTGCCATTTTGGGGT
AGTAGAAGATAATAATACCTCTGGCCTTGGAATATTGTCAGTGAGGTGTG
GTAGGACTCAAGGCATTTGAGTTGACCTGTTCTCCAGTAGAAGTTCCCAG
CATTCCCTAAGAAAGACTGACCTTGCCTTGATTGCATAACACATGGCTTT
CCCAGATTCACCATGGACTCATTTATACATCATGTATTAAATACTTGCTG
AGTTCCAAGGTTGGGTCTAGGAGAAAA
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAGGTGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAATCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCATAATTTCAGGTGACAGCAGATGCTGGTGAGGATTTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGTGGTTCCTCAGAATATTGGACATAGTACTACCAGGGGATC
ACACAATTTCTTACTTGCACCCCCCCCCCCCAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGAACAAAAAAGACTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCATCTGAGGATTGGATACAGACA
ATGTGGTACATTTACACTATGTAGTACTACCTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGGCAAATGGATGGTACTGGAAGACATCATCCTG
ATTGACGAAACCTAATCACTCAGGAACTCACTTAATTATGTCTTCTTTGA
TATTTGTCTTTAATTCCAGATAATTTATTGTATCTCTTAATTTTATTATG
TATCTTGATATAATGATGTATAATTTTGGAGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_n16.b1 MSMg01no160_n16.b1 CHROMAT_FILE:
MSMg01no160_n16.b1 PHD_FILE: MSMg01no160_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:55 2005
         (309 letters)



>mm_chr1_186146620_186147328
          Length = 709

 Score =  553 bits (286), Expect = e-162
 Identities = 298/306 (97%), Gaps = 7/306 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgaatttgctggtggttctctgtatacggttcccactcaggcctggcacaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggaattcttgaatttgctggtggttctctgtatacggttcccactcaggcctggcacaca 348

                                                                       
Query: 64  tccggccttatacctgatagaccagggtttctaacaaaaagaatgctgctttcctcctgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tccggccttatacctgatagaccagggtttctaacaaaaagaatgctgctttcctcctgc 288

                                                                       
Query: 124 catcgaaccttgtaagggccagatgattctgcaggacagattcatcctggctcccttacc 183
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 catcgagccttgtaagggccagatgattctgcaggacagattcatcctggctcccttacc 228

                                                                       
Query: 184 tggacaggtgagagtgtgacgacaccctgtaagagggctcagcaggtaaaaacacttgcc 243
           |||||||||||||||||||||||       ||||||||||||||||||||||||||||||
Sbjct: 227 tggacaggtgagagtgtgacgac-------aagagggctcagcaggtaaaaacacttgcc 175

                                                                       
Query: 244 atataagcctacagggatgtgagtttgatccctggaacccatggtagaattagagaacca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atataagcctacagggatgtgagtttgatccctggaacccatggtagaattagagaacca 115

                 
Query: 304 actctt 309
           ||||||
Sbjct: 114 actctt 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)