BAC Information

Click to search

BAC

Clone NameMSMg01-160P03
Chromosome1 (Build37)
Map Location 188,479,000 - 188,479,236
singlet/doubletsinglet
Overlap geneTgfb2
Upstream geneLOC677785, Lyplal1
Downstream geneRrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160P03.T7 (MSMg01no160_p03.b1)MSMg01-160P03.TJ (MSMg01no160_p03.g1)
ACCAG360479AG360480
length932788
length of high quality
(start - end)
---237 (74 - 310)
definitionCHROMAT_FILE: MSMg01no160_p03.b1 PHD_FILE: MSMg01no160_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:03 2005CHROMAT_FILE: MSMg01no160_p03.g1 PHD_FILE: MSMg01no160_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGTCCAAAACTTGGTGGCGGCCAAAACAAATCACTATATTTCCCAGGAA
TTCGCGGAATTCCAACCACGAGCCACCCATGGTGCTCCAAGATACTGAAC
TCTACCACTCCTAGCGAGAAAAGGTACCACGACCCCAGACACTATTGCAC
CGCCCATTCCTCCTTGCCGCCCGTAATACCTATCCTGAATTATTATACAC
CTTTTATATTTTTAAACGCCGGAGTCTGATCTCATTTATACCGTTCTCCC
TCTTCATCATAGCACCGTTGCCAACTGCGGTTATCCAACATACGACATAA
TGTTCAACCCACATTGAATTCGCCGTTTTCCCAATTGTTCCTTAACACCC
TCTTTGTTAATTCGCCTCCGTCCTCTTTTTCAAACCAGAATATAGCAAAA
AACCACACCTGCTAACTTGAGAAAATTTGTTGGGACCAAAATAGCCTCCG
CCCCGCCCCCCGAATATTACTATCGCGTACACCCCACACCCCTTCCCCTC
CCATATTTTTAATTCTAATATAGTCGCCGTATTCGGATGAATCTCTGAAT
ATATTACTATTACATACGCTCAGAATCGGTAGTCACAATAATAACCAGCC
CCCCCTACTCTTAGGATTTGCTCAATTCAAAATTTCACACCCTTCCGCCT
ACGTTTCATTAGCAGTCGCCCAAATTACCCACGATACCCTATTCCCCACC
CGCTAATCCAATACCGCTCAACCCCGTAATTTAACCCCCCAACCCATCAA
TATATTATAGCCCCCATTTCACCATATAACGCATTTGTGCCGTTCCCCCG
ATATCCCGCTTTTGAGACATTTTCCTTCCACCCGTTGTGCCCAATCATAT
CCGTACGCATTATAGCCGTTATACTACCACCGCACCGCTACAATAAACAT
AAATATATAAACCACACCACCAACGACTTTTT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTCAGGCAGCAAGAGAGCTTCCCTCC
TGGGCACATTCACAAAGACCCAGTGGCTACTTGGCAGCTTTGCAAGGGAC
CTGAGGAGAGATTTGTGCAGGATCCAGGGCTCCAACTTCCCTTCTGTTTT
CTCATGTGGTCACGACAGCACCATTCAATATTGACTTGCCTGGGTACATA
GAGAAGAGACAGGCTCTGAAAAGCTAGATGGCGCTCCTGGTGGATTCAGC
CAACGAGTTGGTATTCGAGTTGAGATACCCACTGAGACTTTCCTGCCCTG
AGATCTTTTCGTTCTGTGTGAATCGACTAGTCCCTTTTTTTCCTAGTTAA
ATTTATGTGGTTCCCCACCCCCAATATTAACCTTCCCCCTTTGTTGTTGT
AATTTTATTTCTTTTTTTCCCCTCCCGCCCCATCTCTTCTTATTAACCCG
TTTCTTCTTCTCTCCCCCCTAATTTCCTTTTAAATCACCAACCATTTTGT
CCTCTTTTTCCCCCATTTTTTTCTTCTTTTTTCTCCCTTTTTTTTCCCAT
TCTTCCCCCCCTTTTTTCTCCCTTTAATATGACCAAATTACTTTATTATT
CAACCAAACATCACCCTACATATCCCCGATCTTTTTTTTATCCATTCTAC
CTTTCCTCTCCACCCCTCTCTCCACACCGTTTTTCCCTCTTCATCACCTC
TCCCCTCCCTTTCACTTTTTTTTTGTCCCCCTTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_p03.g1 MSMg01no160_p03.g1 CHROMAT_FILE:
MSMg01no160_p03.g1 PHD_FILE: MSMg01no160_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:03 2005
         (237 letters)



>mm_chr1_188478800_188479436
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcaggcagcaagagagcttccctcctgggcacattcacaaagacccagtggctacttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 437 tgtcaggcagcaagagagcttccctcctgggcacattcacaaagacccagtggccacttg 378

                                                                       
Query: 61  gcagctttgcaagggacctgaggagagatttgtgcaggatccagggctccaacttccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcagctttgcaagggacctgaggagagatttgtgcaggatccagggctccaacttccctt 318

                                                                       
Query: 121 ctgttttctcatgtggtcacgacagcaccattcaatattgacttgcctgggtacatagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctgttttctcatgtggtcacgacagcaccattcaatattgacttgcctgggtacatagag 258

                                                                    
Query: 181 aagagacaggctctgaaaagctagatggcgctcctggtggattcagccaacgagttg 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagagacaggctctgaaaagctagatggcgctcctggtggattcagccaacgagttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)