BAC Information

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BAC

Clone NameMSMg01-161B16
Chromosome1 (Build37)
Map Location 115,379,112 - 115,379,516
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161B16.T7 (MSMg01no161_b16.b1)MSMg01-161B16.TJ (MSMg01no161_b16.g1)
ACCAG360595AG360596
length1,2961,292
length of high quality
(start - end)
420 (28 - 447)325 (71 - 395)
definitionCHROMAT_FILE: MSMg01no161_b16.b1 PHD_FILE: MSMg01no161_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:20 2005CHROMAT_FILE: MSMg01no161_b16.g1 PHD_FILE: MSMg01no161_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGGCACTGGCGCTATACATCCTAAGGGAGAGGATCCGCGGAATTCTC
CCCCAAAGCTTTCATCACTGAAAGCTTTTTGAGTCTACAACAGTCATTTC
CCACTTGTTGACCCTGACCTTGGCTCCTACCTGCACCCCAGGAGTTCACT
GTGCCAATCTAGACTTCAGTGTTCTGCCACCTGCTGCTCCCAGTCAGTTC
ACAGCTTTCCATTGGTCCATTCCCAGTCAGTCCATAGCTTTCCATTGGTC
CATTCCCAGTCAGTCCATAGTTTCCCATTGGTCCATTTCCAGTCAGTCCA
TAGCTTCCCACAGCTCTGGAGCATGACTGGTCTACAAAGAGAGCCAGCAG
CCTTCTCTGAGCTGACTCACATCCTCTTAGGAAGAGTATAAATAACTCTT
TGGCTGCTTCAGCCTGACCAGAGTTCTGTATGTCACCATGGACAGCATCT
TTTTTCCCCCCCCCCAATGTTCCAGGCTGGAGTCCAAAACAAAAAGGAGC
TATCAGTCACTGATAAAAATCACCTCTTGAGTTTCACTTCCGTGCTGCTT
TCTGAGTACAATTCAGAGTCAGAATTATATTGATGTGAACTAATAGAATG
AGTTAAGGGAGTTATTGAGAAAACAGGACATTTTGCTTTCTGTGGGGCTG
ACCATTTCTGGAGCAGCAAGTCATCTCTTTGATGTCATAGCTTAGATATT
GCTCCTCAAACTTGTACTCACTATGAGTCTTAACAGGAACATGTTTGNGT
TTATTTATTCTTATTGTCCTTCAGCCAAATGAAAATATAGAAACCCAAGT
ATGTTTTATACCACCTTATGGATTTTCTCTCCGAAAAAACTTTGGAATGT
AAATCAATTACGATTTTTGTTTTTTTGTACTCCACTTTACTTGTTGCTTG
CAGCCATGTTTTATTCATATATCTAATCAAGTTCCTTAATGGTTATAAAT
AAATTTTGTTACTTCTTTAATATATTTTTCTTCTTCTTAAATTTGTATTA
AATAATCTTTTTATATCTTTTTTGTATATTTTATTTTTTTCTATTGTTCC
TTGCATTTTTTATGATTTCTCCATCATCCCCCTTCGATATTGTATAAATT
TTAACTTCACTTTATACAAATACTCTCTCCTTTTTTTTTCTTTATTATCC
AGTTATCTTATAATTTTTTCATATTTAATATTCACTTTATCCTTTCCCGT
TATACACTTTATGTTTTATTCTTTCCTTAAATTTATACACTTATCTTGCT
AATATACTGGATATTATCCTACTATTATGTACTGTTGATTATATTC
NNNGGCTCTTGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCTTCATGTCCTCTATCATCATCATGAG
ATATGCTTTTAAATCTGGGTCTAGATATTTGGTTGTGTTGGGGTGCCCAG
GACTAGGTGGGGTAGGAATGCTGCGTTCTGATGATGGTGAGTGGTCTTGA
TTTCTGTTAGTAGGATTCTTACATTTGCTTTTAGCCATCCGGTAATCTAT
GAAGCTAGCTGTTATAGGTGTCTCTGGTTGGAGTTTGTTACTCAGGTGAT
TATGTTAGCCTCTATCAGCAGAACTGGGAGACTGGATCCATCCTTAGTTT
CAGTGGTCAGAGTACTCTCTGCATGCAAGCTCTCCTCTTGCAGGGATTTT
TTCCAGATATCTGGTGTTTGAACCTGCCTCCTGGCAGAAGTTGTGTTTTT
TTTTTTCCCCCCCCCCAGGNTCCTGTGGCTCATCCTGAAAAAAAGGTTGC
TGGTGTCCGGAGACTCCCCAGTCCAGGGACCCCGGTGCTGCAGTCTAATT
TATTTTCTTAAGCAACTTTTGTGAGGGCTGTTCCTAAGCTGTGTGTAAGC
ATCTGTGTAGTGTGCATATTACTGCTGTGTATGGGAATGGAGCCCAGGAA
TATAGGAGTCTCCTAATAAAGAAAAATAATCCTACATTTTTACCCCTTAG
GAAAAAAAAAAACTTAATTTACCACAGGCCCTTAGGCAGCTCATCAGATG
GAAAATAATATCAGCTGGGCTTTCTACTCTTGCATTAACAATTAGAATCA
AAATGGATTACCTTGTGTGCCTTTTTCCTTTTTTATAGTTATTTAGGAAC
TGGTAAATTTTTGGATTTCCCTCCTTATTTCTTGTTTTTCTTTCCACCTA
TGCTCTTTCTCTCCTCTTTTTTTTGCTTCTGTATTAAAATTTTTTTTTTT
CCTTTTCTTTTTGCTTATCCCCTTCCTCTCTCTCTTTGCTTCCTCTTTTC
TTCTTTTCTATATTTTTCTTGCTCTTTTATTTCTTTTTTACTTTCTTTCT
TCCTTTTTTTTTCTTATCTATTTTCTCTTATTCTTTCTCTGTTTTTAATT
ATTTCCCTTTTTTTCTTCTCTTTTGACTCTTTTTCTCTTCTATTGTCTCT
GATTATTCTTATATTTATATCCTTTTTCCAGTTTTTACTCTTCACTTTTT
ATTTATCCCTCACTCTCTCTCTCTGATTATTTTTTTCTTCTGCTTATTTA
TTTTTATCTTTTTCANTGCCTTGCTCTCTTCTTTCTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_b16.b1 MSMg01no161_b16.b1 CHROMAT_FILE:
MSMg01no161_b16.b1 PHD_FILE: MSMg01no161_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:20 2005
         (420 letters)



>mm_chr1_115378897_115379716
          Length = 820

 Score =  737 bits (381), Expect = 0.0
 Identities = 399/405 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctcccccaaagctttcatcactgaaagctttttgagtctacaacagtcatttccc 75
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 gaattctcccccaaagctttcatcactggaagctttttgagtctacaacagtcatttccc 561

                                                                       
Query: 76  acttgttgaccctgaccttggctcctacctgcaccccaggagttcactgtgccaatctag 135
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 acttgttgaccctgaccttggctcctaactgcaccccaggagttcactgtgccaatctag 501

                                                                       
Query: 136 acttcagtgttctgccacctgctgctcccagtcagttcacagctttccattggtccattc 195
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 acttcagtgttctgccacctgctgctcccagtcagttcatagctttccattggtccattc 441

                                                                       
Query: 196 ccagtcagtccatagctttccattggtccattcccagtcagtccatagtttcccattggt 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccagtcagtccatagctttccattggtccattcccagtcagtccatagtttcccattggt 381

                                                                       
Query: 256 ccatttccagtcagtccatagcttcccacagctctggagcatgactggtctacaaagaga 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccatttccagtcagtccatagcttcccacagctctggagcatgactggtctacaaagaga 321

                                                                       
Query: 316 gccagcagccttctctgagctgactcacatcctcttaggaagagtataaataactctttg 375
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gccagcagccttctccgacctgactcacatcctcttaggaagagtataaataactctttg 261

                                                        
Query: 376 gctgcttcagcctgaccagagttctgtatgtcaccatggacagca 420
           |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 260 gctgcttcagcctgaccagagtcctgtatgtcaccatggacagca 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)