BAC Information

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BAC

Clone NameMSMg01-161C06
Chromosome1 (Build37)
Map Location 6,383,077 - 6,383,436
singlet/doubletsinglet
Overlap geneEG620393
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, LOC100039302, LOC664946
Downstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161C06.T7 (MSMg01no161_c06.b1)MSMg01-161C06.TJ (MSMg01no161_c06.g1)
ACCAG360623AG360624
length1,2251,240
length of high quality
(start - end)
415 (28 - 442)371 (70 - 440)
definitionCHROMAT_FILE: MSMg01no161_c06.b1 PHD_FILE: MSMg01no161_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:25 2005CHROMAT_FILE: MSMg01no161_c06.g1 PHD_FILE: MSMg01no161_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAGCATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCCT
GATCTTTCCAGACTTTTTCATGAAGGGATATTGAATTTTCTCAAATGGTT
TTTCAGCATCTAATAAAATGATCATGTGGGTTTTTTTTTCTTTGAGTTTG
TTTATGTAGTGGACTACATTAATGGATTACTATCCTTGCATCCCTGGGTT
AAAGCCTACTTGGTCGTGGTAAATGATCTCTTTGATGTGTTCTTGGATTC
CATTTGTTTATTGAGAATTTTTGCATCAGTATTCATAAGTGAAATTGGTC
TGAAATTCTTTGTTGGGTCTTTGTGATTTAGGTATCAGCTTAGGCTTTAT
AGAATGAAATAGAAAGTGTTCCTTCTATTTCTGTTTTGTGGATTTTTTGC
CCTTGGTCATGTGGAGGCTTGATGCCCCAGAGTAGAGGAATGTTATTTTT
CCCCCCCCCCAGTGGATGGGTAAGAGGGAAAAAAAAAACATAGAGGNAAA
GGGTAGGAGGGATTTGATGGGGTGTTGAGGTTGGNAGATTTTTTAGGTGG
ATTGTATTTGTAATGTATTTTATTAATATTATTAATATGGAATTATTAAA
TATTATTGATTANTATTTATTGTGTAGTTATTTATTTAGTTTGTATTGTG
TTTAATTTGGAAATTTTATTTTGTTTTTTTGTTTAATGTAATGTTATGGT
TGAATTATGTTGATTTATTTTATTAATTTTATATTTTGCTCCTTGTTTGT
AAAATATATTTTTTAGTTTTTATTTTATATTTTTTTTATGTTATATAATT
TAGTTATTATTTAATTTTATGTTTAGTTATATTTGTTTTTTTTTAATTTT
TTATTAATTTTTATTAATTTTTTTTATTTTTTGAATTATATTTTTGTAAT
TATATATTTATTTATTGTTTTTTTTTTGTTTTATTGTAATATTTTTTTAT
ATTATTATTTATTTTTATATTTTAATATTTTTATTTTGTATATTTTTTTT
AATTTTATTTTATGTATTTATATTTTTATTTATATTTGTTTTTATTGATT
ATTTTATTATTTTATATTTTTTTTTTTTGTGTGATTTTATTTTTTTTATT
AATTAAAATTTTTATTATTNTATTTTTTTTTTTTTTTTTTTATATAATTT
ATATTTTTTTTTTAATTTTAAATATTATAGTATATATTATATTATTTGAT
AATTTTAATTATTTTATGTATTTAT
NNNCCTTCAGTGTAGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTCAAATAATTTCAATAGTTGAAGGTATTT
TCTTATGTATTTATGTTTTGAAAATTCAAAAGGGTTGCAGCAGCTTAAAA
GCAATCCATTCATATAATTTATCAGGGGATACTGAAATGAGTTAGCACAA
TTTCTTCACCTTATACAAGGAAAAATTTTGTGGCTGTGAATATTCAAAAT
TCACAGGGCTTATGTTTCTAATTTGCAGGGGCTGCTTTAAAATAATAAGA
ATAGCAACAATGGGACAAGACAGCTTCAACTGATTCATCACATAAAATCA
CTATTTTAATTATGTGTGATAGCACTTTAGTATTATGTGGGGAATTATAC
ACTTCACTGTTTTCAACACAGGAAAGTTTCAGCACCTCAAATGTCTGTGA
GTTTTTCCCCCCCCCCCCGATAGGCTGAATTACACAGGCCAAAGAAAGGG
GCTTGGGAATATTTCTAGAATACTGGTACTCAAAACTGCCACTCCCCACC
ATCTTGACCTGAAGAACCAAGTGCCTTGTAGGGAATTATCCATGGTACTG
AGAGCAGACCTCCCACCCCCACCCAATTGACTTTGTACCACACTGGGAAA
GAACTCAGATTAGAAACAATCATGTAGCAAAAACATTAGACTCTTTCGGG
GTATTGTGTAGAGTCTACATTTATAAACTACAATTATAATTTATCAGGGT
TGGAGAGATGGCTCAGTGATTAAGAACACTGGCTGTTACCCCAGAAGACT
CAGGTTTAGTTCCCGGCACCTACATGACAGCAACTGTCTGTAATTCCGGT
TCCAGAGAATCTGGCACCCTCACACAAACATGCATTCAGGGCAAGCATCA
CCTGACTTAAAAATAAATAAATAATTTAAAATAATTTACCTGCCCCTAAA
AGGGCAGCGACCAAACTTTTACTCCAAGGTGAAAGGGGAAATACCCAGGG
GCGAAACTGAATTTCCAGGCCCCAGGGCCTTGGTTCAAGGACCTTTCCAG
GAAGGGTAAAACACCGGATTTTTTCTTTGGTCAAAAATTCATCTTTAAAA
GGGCGCTTATTATAAAGAAAAACTTTTAAAAAAAGGAGCAAAAAATCCCT
CACCCTAAACAAACCGGGGGGAGAAGAAAAATTAAGTTATGTGGTTAAAA
AAAAAANCCACAACCTCTCCAAACGGATTTTTTGTGTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_c06.g1 MSMg01no161_c06.g1 CHROMAT_FILE:
MSMg01no161_c06.g1 PHD_FILE: MSMg01no161_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:25 2005
         (371 letters)



>mm_chr1_6382870_6383637
          Length = 768

 Score =  601 bits (311), Expect = e-176
 Identities = 349/363 (96%), Gaps = 3/363 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   taatttcaatagttgaaggtattttcttatgtatttatgttttgaaaattcaaaagggtt 67
           ||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||
Sbjct: 567 taatttcaatagttgaatgtatt---ttatgtatttatgttttgaaaattcaaaagggtt 511

                                                                       
Query: 68  gcagcagcttaaaagcaatccattcatataatttatcaggggatactgaaatgagttagc 127
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 510 gcagcagcttagaagcaatccattcatataatttatcagtggatactgaaatgagttagc 451

                                                                       
Query: 128 acaatttcttcaccttatacaaggaaaaattttgtggctgtgaatattcaaaattcacag 187
           |||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 450 acaattgcttcaccttacacaaggaaaaattttgtggctgtgaatattcagaattcacag 391

                                                                       
Query: 188 ggcttatgtttctaatttgcaggggctgctttaaaataataagaatagcaacaatgggac 247
            ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgcttatgtttctaatttgcaatggctgctttaaaataataagaatagcaacaatgggac 331

                                                                       
Query: 248 aagacagcttcaactgattcatcacataaaatcactattttaattatgtgtgatagcact 307
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 330 aagacagcttcaactgattcatcacatacaatcactattttaattatgtgtgatagcact 271

                                                                       
Query: 308 ttagtattatgtggggaattatacacttcactgttttcaacacaggaaagtttcagcacc 367
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttagtattatgtgtggaattatacacttcactgttttcaacacaggaaagtttcagcacc 211

              
Query: 368 tca 370
           |||
Sbjct: 210 tca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 768
Length adjustment: 9
Effective length of query: 362
Effective length of database: 759
Effective search space:   274758
Effective search space used:   274758
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)